Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00945

Experiment: monoculture; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 3
1,046,077	+		MIT1002_00944	0.33	-1.6
1,046,139	+		MIT1002_00944	0.37	-2.1
1,046,173	-		MIT1002_00944	0.40	-2.1
1,046,173	-		MIT1002_00944	0.40	-1.8
1,046,175	+		MIT1002_00944	0.40	-1.0
1,046,246	-		MIT1002_00944	0.46	-1.2
1,046,257	+		MIT1002_00944	0.47	-0.2
1,046,258	-		MIT1002_00944	0.47	+0.4
1,046,263	+		MIT1002_00944	0.47	-1.5
1,046,270	-		MIT1002_00944	0.48	-2.3
1,046,460	-		MIT1002_00944	0.62	+0.7
1,046,499	-		MIT1002_00944	0.65	-1.9
1,046,502	-		MIT1002_00944	0.66	-0.8
1,046,507	+		MIT1002_00944	0.66	-2.4
1,046,518	+		MIT1002_00944	0.67	-3.0
1,046,526	-		MIT1002_00944	0.68	-1.0
1,046,637	+		MIT1002_00944	0.76	-2.2
1,046,645	-		MIT1002_00944	0.77	-1.2
1,046,703	+		MIT1002_00944	0.81	-3.3
1,046,708	+		MIT1002_00944	0.82	-2.1
1,046,713	+		MIT1002_00944	0.82	-0.4
1,046,716	-		MIT1002_00944	0.82	-2.5
1,046,743	+		MIT1002_00944	0.84	-1.2
1,046,938	+				-1.3
1,046,991	-				-1.4
1,047,038	+				+0.6
1,047,047	+				+0.6
1,047,108	-				+0.7
1,047,109	-				-0.2
1,047,210	+		MIT1002_00945	0.13	-0.2
1,047,243	-		MIT1002_00945	0.16	-0.3
1,047,309	+		MIT1002_00945	0.21	+0.8
1,047,420	-		MIT1002_00945	0.31	+0.3
1,047,537	-		MIT1002_00945	0.40	-0.0
1,047,699	+		MIT1002_00945	0.54	-1.4
1,047,712	+		MIT1002_00945	0.55	-0.2
1,047,758	+		MIT1002_00945	0.59	+1.8
1,047,758	+		MIT1002_00945	0.59	+1.0
1,047,763	+		MIT1002_00945	0.59	+1.5
1,047,763	+		MIT1002_00945	0.59	-1.0
1,047,766	-		MIT1002_00945	0.60	+0.8
1,047,766	-		MIT1002_00945	0.60	+0.2
1,047,790	-		MIT1002_00945	0.62	+0.2
1,047,794	+		MIT1002_00945	0.62	-0.4
1,047,797	-		MIT1002_00945	0.62	+1.4
1,047,797	-		MIT1002_00945	0.62	+0.4
1,047,802	-		MIT1002_00945	0.63	+0.5
1,047,802	-		MIT1002_00945	0.63	-1.4
1,047,822	+		MIT1002_00945	0.64	+0.0
1,047,880	+		MIT1002_00945	0.69	+1.4
1,047,964	-		MIT1002_00945	0.76	+1.2
1,047,965	-		MIT1002_00945	0.76	-1.4
1,047,972	-		MIT1002_00945	0.77	+0.5
1,047,985	+		MIT1002_00945	0.78	-0.7
1,047,999	+		MIT1002_00945	0.79	-0.2
1,048,019	-		MIT1002_00945	0.81	-0.9
1,048,080	-		MIT1002_00945	0.86	-0.7
1,048,125	-		MIT1002_00945	0.90	+0.7
1,048,263	-				+1.1
1,048,344	+				-0.3
1,048,363	-				-1.0
1,048,406	+				+0.1
1,048,505	+				+0.4
1,048,514	-				-0.4
1,048,528	+				+0.5
1,048,546	+				-1.3
1,048,549	+				+0.4
1,048,557	-				-0.7
1,048,585	+				-0.4
1,048,646	+				-5.1
1,048,654	-				-1.3
1,048,667	+		MIT1002_00946	0.12	-2.2
1,048,683	-		MIT1002_00946	0.14	-3.0
1,048,683	-		MIT1002_00946	0.14	-1.9
1,048,729	-		MIT1002_00946	0.22	-7.0
1,048,794	-		MIT1002_00946	0.33	-5.2
1,048,850	+		MIT1002_00946	0.42	-5.3
1,048,995	+		MIT1002_00946	0.66	-1.2
1,048,998	-		MIT1002_00946	0.66	-4.8
1,049,002	+		MIT1002_00946	0.67	-2.7
1,049,002	+		MIT1002_00946	0.67	-3.5
1,049,002	+		MIT1002_00946	0.67	-0.2
1,049,010	-		MIT1002_00946	0.68	-4.0
1,049,010	-		MIT1002_00946	0.68	-2.9
1,049,010	-		MIT1002_00946	0.68	-4.9
1,049,010	-		MIT1002_00946	0.68	-0.9
1,049,164	+				-1.7
1,049,172	+				-0.2
1,049,175	-				-1.5
1,049,178	-				-0.7