Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00678

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00677 and MIT1002_00678 are separated by 178 nucleotidesMIT1002_00678 and MIT1002_00679 are separated by 102 nucleotidesMIT1002_00679 and MIT1002_00680 are separated by 278 nucleotidesMIT1002_00680 and MIT1002_00681 are separated by 1 nucleotides MIT1002_00677: MIT1002_00677 - Fructose-1-phosphate phosphatase YqaB, at 741,476 to 742,177 _00677 MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651 _00678 MIT1002_00679: MIT1002_00679 - hypothetical protein, at 743,754 to 744,086 _00679 MIT1002_00680: MIT1002_00680 - hypothetical protein, at 744,365 to 744,556 _00680 MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583 _00681 Position (kb) 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 741.392 kb on + strandat 741.392 kb on + strandat 741.392 kb on + strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.408 kb on - strandat 741.417 kb on + strandat 741.425 kb on - strandat 741.484 kb on + strandat 741.501 kb on - strandat 741.727 kb on + strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.840 kb on - strand, within MIT1002_00677at 741.848 kb on - strand, within MIT1002_00677at 741.916 kb on - strand, within MIT1002_00677at 741.941 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.957 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.127 kb on + strandat 742.132 kb on + strandat 742.191 kb on + strandat 742.256 kb on - strandat 742.261 kb on + strandat 742.377 kb on - strandat 742.407 kb on + strandat 742.479 kb on - strandat 742.488 kb on + strand, within MIT1002_00678at 742.488 kb on + strand, within MIT1002_00678at 742.492 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.515 kb on - strand, within MIT1002_00678at 742.518 kb on - strand, within MIT1002_00678at 742.562 kb on - strand, within MIT1002_00678at 742.577 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.610 kb on + strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.711 kb on - strand, within MIT1002_00678at 742.723 kb on + strand, within MIT1002_00678at 742.775 kb on - strand, within MIT1002_00678at 742.834 kb on - strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 743.039 kb on - strand, within MIT1002_00678at 743.127 kb on + strand, within MIT1002_00678at 743.201 kb on - strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.268 kb on - strand, within MIT1002_00678at 743.298 kb on + strand, within MIT1002_00678at 743.366 kb on + strand, within MIT1002_00678at 743.382 kb on + strand, within MIT1002_00678at 743.389 kb on - strand, within MIT1002_00678at 743.390 kb on - strand, within MIT1002_00678at 743.443 kb on - strand, within MIT1002_00678at 743.447 kb on + strand, within MIT1002_00678at 743.494 kb on - strand, within MIT1002_00678at 743.549 kb on + strandat 743.564 kb on + strandat 743.572 kb on - strandat 743.660 kb on - strandat 743.668 kb on - strandat 743.668 kb on - strandat 743.729 kb on - strandat 743.788 kb on + strand, within MIT1002_00679at 743.910 kb on - strand, within MIT1002_00679at 743.923 kb on + strand, within MIT1002_00679at 743.925 kb on + strand, within MIT1002_00679at 744.021 kb on - strand, within MIT1002_00679at 744.029 kb on + strand, within MIT1002_00679at 744.047 kb on + strand, within MIT1002_00679at 744.069 kb on - strandat 744.119 kb on + strandat 744.143 kb on - strandat 744.169 kb on - strandat 744.286 kb on + strandat 744.301 kb on - strandat 744.303 kb on + strandat 744.303 kb on + strandat 744.309 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.378 kb on + strandat 744.386 kb on - strand, within MIT1002_00680at 744.386 kb on - strand, within MIT1002_00680at 744.387 kb on + strand, within MIT1002_00680at 744.407 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.431 kb on - strand, within MIT1002_00680at 744.441 kb on + strand, within MIT1002_00680at 744.478 kb on + strand, within MIT1002_00680at 744.539 kb on + strandat 744.547 kb on - strandat 744.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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741,392 + +0.3
741,392 + +0.3
741,392 + +0.9
741,400 - +0.2
741,400 - -0.1
741,400 - +0.4
741,408 - -0.3
741,417 + -0.3
741,425 - -0.1
741,484 + +0.0
741,501 - +0.1
741,727 + MIT1002_00677 0.36 +1.2
741,818 - MIT1002_00677 0.49 +1.0
741,818 - MIT1002_00677 0.49 +0.1
741,840 - MIT1002_00677 0.52 -1.3
741,848 - MIT1002_00677 0.53 +0.2
741,916 - MIT1002_00677 0.63 -1.3
741,941 + MIT1002_00677 0.66 -0.0
741,949 + MIT1002_00677 0.67 -0.7
741,949 + MIT1002_00677 0.67 +0.2
741,957 - MIT1002_00677 0.69 +0.6
741,977 - MIT1002_00677 0.71 +0.2
741,977 - MIT1002_00677 0.71 -0.0
742,064 + MIT1002_00677 0.84 -0.0
742,064 + MIT1002_00677 0.84 +0.3
742,072 - MIT1002_00677 0.85 -0.0
742,072 - MIT1002_00677 0.85 +0.3
742,127 + -2.3
742,132 + -0.1
742,191 + -2.9
742,256 - -2.4
742,261 + -0.3
742,377 - +0.4
742,407 + -0.4
742,479 - +1.4
742,488 + MIT1002_00678 0.10 -1.0
742,488 + MIT1002_00678 0.10 -0.6
742,492 - MIT1002_00678 0.10 -1.5
742,498 - MIT1002_00678 0.11 +0.3
742,498 - MIT1002_00678 0.11 -2.7
742,515 - MIT1002_00678 0.12 -2.2
742,518 - MIT1002_00678 0.12 +0.8
742,562 - MIT1002_00678 0.16 -1.9
742,577 + MIT1002_00678 0.17 -0.2
742,608 + MIT1002_00678 0.19 +0.3
742,608 + MIT1002_00678 0.19 +0.4
742,608 + MIT1002_00678 0.19 -0.1
742,608 + MIT1002_00678 0.19 +0.4
742,608 + MIT1002_00678 0.19 +0.5
742,610 + MIT1002_00678 0.20 -0.8
742,616 - MIT1002_00678 0.20 -0.0
742,616 - MIT1002_00678 0.20 +0.4
742,616 - MIT1002_00678 0.20 +0.9
742,631 + MIT1002_00678 0.21 +0.1
742,631 + MIT1002_00678 0.21 -0.1
742,631 + MIT1002_00678 0.21 +2.0
742,711 - MIT1002_00678 0.27 +0.3
742,723 + MIT1002_00678 0.28 +0.6
742,775 - MIT1002_00678 0.32 -0.2
742,834 - MIT1002_00678 0.37 -1.7
742,918 + MIT1002_00678 0.43 +0.0
742,918 + MIT1002_00678 0.43 -0.0
743,039 - MIT1002_00678 0.53 +1.3
743,127 + MIT1002_00678 0.59 -0.6
743,201 - MIT1002_00678 0.65 -1.4
743,237 + MIT1002_00678 0.68 -0.0
743,237 + MIT1002_00678 0.68 -0.8
743,245 + MIT1002_00678 0.69 +0.7
743,245 + MIT1002_00678 0.69 +0.8
743,245 + MIT1002_00678 0.69 +0.4
743,268 - MIT1002_00678 0.70 +1.7
743,298 + MIT1002_00678 0.73 +0.0
743,366 + MIT1002_00678 0.78 -0.0
743,382 + MIT1002_00678 0.79 -0.6
743,389 - MIT1002_00678 0.80 +0.9
743,390 - MIT1002_00678 0.80 -0.9
743,443 - MIT1002_00678 0.84 +0.0
743,447 + MIT1002_00678 0.84 -1.0
743,494 - MIT1002_00678 0.88 -0.2
743,549 + +0.3
743,564 + -0.3
743,572 - -1.5
743,660 - -0.6
743,668 - +1.2
743,668 - +0.3
743,729 - +0.0
743,788 + MIT1002_00679 0.10 +0.8
743,910 - MIT1002_00679 0.47 -1.0
743,923 + MIT1002_00679 0.51 -0.7
743,925 + MIT1002_00679 0.51 -0.0
744,021 - MIT1002_00679 0.80 -1.5
744,029 + MIT1002_00679 0.83 +1.7
744,047 + MIT1002_00679 0.88 -1.3
744,069 - -1.8
744,119 + +1.3
744,143 - +0.4
744,169 - -0.9
744,286 + +1.0
744,301 - -0.1
744,303 + -1.1
744,303 + -1.2
744,309 - +0.1
744,311 - -1.4
744,311 - +0.2
744,311 - +0.2
744,311 - +0.1
744,378 + -0.2
744,386 - MIT1002_00680 0.11 -0.2
744,386 - MIT1002_00680 0.11 +0.3
744,387 + MIT1002_00680 0.11 -0.1
744,407 + MIT1002_00680 0.22 -0.2
744,423 + MIT1002_00680 0.30 -0.1
744,423 + MIT1002_00680 0.30 -0.0
744,431 - MIT1002_00680 0.34 -1.2
744,441 + MIT1002_00680 0.40 -1.8
744,478 + MIT1002_00680 0.59 -0.3
744,539 + +0.9
744,547 - -0.3
744,569 + +1.2

Or see this region's nucleotide sequence