Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00658

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00657 and MIT1002_00658 are separated by 149 nucleotidesMIT1002_00658 and MIT1002_00659 are separated by 49 nucleotides MIT1002_00657: MIT1002_00657 - hypothetical protein, at 713,816 to 714,703 _00657 MIT1002_00658: MIT1002_00658 - Ribosomal large subunit pseudouridine synthase A, at 714,853 to 715,569 _00658 MIT1002_00659: MIT1002_00659 - RNA polymerase-associated protein RapA, at 715,619 to 718,480 _00659 Position (kb) 714 715 716Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 713.993 kb on - strand, within MIT1002_00657at 713.996 kb on - strand, within MIT1002_00657at 713.999 kb on + strand, within MIT1002_00657at 714.046 kb on + strand, within MIT1002_00657at 714.122 kb on - strand, within MIT1002_00657at 714.125 kb on + strand, within MIT1002_00657at 714.159 kb on + strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.175 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.178 kb on + strand, within MIT1002_00657at 714.180 kb on + strand, within MIT1002_00657at 714.187 kb on + strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.204 kb on - strand, within MIT1002_00657at 714.247 kb on + strand, within MIT1002_00657at 714.294 kb on + strand, within MIT1002_00657at 714.302 kb on - strand, within MIT1002_00657at 714.326 kb on - strand, within MIT1002_00657at 714.338 kb on - strand, within MIT1002_00657at 714.377 kb on - strand, within MIT1002_00657at 714.524 kb on + strand, within MIT1002_00657at 714.525 kb on + strand, within MIT1002_00657at 714.525 kb on - strand, within MIT1002_00657at 714.532 kb on - strand, within MIT1002_00657at 714.578 kb on + strand, within MIT1002_00657at 714.586 kb on - strand, within MIT1002_00657at 714.622 kb on - strandat 714.645 kb on + strandat 714.645 kb on + strandat 714.653 kb on - strandat 714.653 kb on - strandat 714.678 kb on + strandat 714.678 kb on + strandat 714.685 kb on + strandat 714.711 kb on + strandat 714.728 kb on + strandat 714.780 kb on + strandat 714.788 kb on - strandat 714.970 kb on - strand, within MIT1002_00658at 714.996 kb on - strand, within MIT1002_00658at 715.068 kb on - strand, within MIT1002_00658at 715.098 kb on + strand, within MIT1002_00658at 715.137 kb on + strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.226 kb on + strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.235 kb on - strand, within MIT1002_00658at 715.236 kb on - strand, within MIT1002_00658at 715.251 kb on - strand, within MIT1002_00658at 715.366 kb on + strand, within MIT1002_00658at 715.380 kb on - strand, within MIT1002_00658at 715.381 kb on + strand, within MIT1002_00658at 715.383 kb on + strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.391 kb on - strand, within MIT1002_00658at 715.440 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.448 kb on - strand, within MIT1002_00658at 715.479 kb on + strand, within MIT1002_00658at 715.486 kb on - strand, within MIT1002_00658at 715.498 kb on + strandat 715.506 kb on - strandat 715.529 kb on + strandat 715.591 kb on - strandat 715.609 kb on - strandat 715.618 kb on - strandat 715.662 kb on + strandat 715.753 kb on - strandat 715.755 kb on - strandat 715.798 kb on - strandat 715.799 kb on + strandat 715.974 kb on - strand, within MIT1002_00659at 716.139 kb on - strand, within MIT1002_00659at 716.224 kb on + strand, within MIT1002_00659at 716.240 kb on - strand, within MIT1002_00659at 716.328 kb on - strand, within MIT1002_00659at 716.385 kb on - strand, within MIT1002_00659at 716.411 kb on + strand, within MIT1002_00659at 716.411 kb on + strand, within MIT1002_00659at 716.419 kb on - strand, within MIT1002_00659at 716.419 kb on - strand, within MIT1002_00659at 716.424 kb on + strand, within MIT1002_00659at 716.454 kb on + strand, within MIT1002_00659at 716.532 kb on + strand, within MIT1002_00659at 716.534 kb on + strand, within MIT1002_00659at 716.542 kb on - strand, within MIT1002_00659at 716.555 kb on - strand, within MIT1002_00659at 716.555 kb on - strand, within MIT1002_00659at 716.562 kb on - strand, within MIT1002_00659at 716.567 kb on - strand, within MIT1002_00659

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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713,993 - MIT1002_00657 0.20 +3.4
713,996 - MIT1002_00657 0.20 -0.2
713,999 + MIT1002_00657 0.21 +0.3
714,046 + MIT1002_00657 0.26 +0.0
714,122 - MIT1002_00657 0.34 -0.2
714,125 + MIT1002_00657 0.35 +0.2
714,159 + MIT1002_00657 0.39 -1.9
714,167 - MIT1002_00657 0.40 +0.2
714,167 - MIT1002_00657 0.40 +1.0
714,175 - MIT1002_00657 0.40 -0.9
714,176 - MIT1002_00657 0.41 -1.0
714,176 - MIT1002_00657 0.41 -2.0
714,178 + MIT1002_00657 0.41 +1.0
714,180 + MIT1002_00657 0.41 +0.3
714,187 + MIT1002_00657 0.42 +0.9
714,195 - MIT1002_00657 0.43 -0.0
714,195 - MIT1002_00657 0.43 +0.4
714,204 - MIT1002_00657 0.44 -0.2
714,247 + MIT1002_00657 0.49 -0.3
714,294 + MIT1002_00657 0.54 -1.7
714,302 - MIT1002_00657 0.55 +0.2
714,326 - MIT1002_00657 0.57 +0.8
714,338 - MIT1002_00657 0.59 -2.2
714,377 - MIT1002_00657 0.63 -0.8
714,524 + MIT1002_00657 0.80 +1.2
714,525 + MIT1002_00657 0.80 -0.2
714,525 - MIT1002_00657 0.80 -0.1
714,532 - MIT1002_00657 0.81 -2.9
714,578 + MIT1002_00657 0.86 +0.1
714,586 - MIT1002_00657 0.87 -0.6
714,622 - -0.5
714,645 + -0.1
714,645 + -1.4
714,653 - -0.7
714,653 - -0.0
714,678 + -2.4
714,678 + -1.8
714,685 + +0.8
714,711 + +1.4
714,728 + -0.8
714,780 + -0.8
714,788 - +1.5
714,970 - MIT1002_00658 0.16 +1.8
714,996 - MIT1002_00658 0.20 -0.8
715,068 - MIT1002_00658 0.30 +0.0
715,098 + MIT1002_00658 0.34 -1.3
715,137 + MIT1002_00658 0.40 -1.0
715,199 - MIT1002_00658 0.48 +0.2
715,199 - MIT1002_00658 0.48 -1.3
715,226 + MIT1002_00658 0.52 -0.2
715,234 - MIT1002_00658 0.53 -1.3
715,234 - MIT1002_00658 0.53 +0.5
715,235 - MIT1002_00658 0.53 -0.7
715,236 - MIT1002_00658 0.53 -0.7
715,251 - MIT1002_00658 0.56 -3.2
715,366 + MIT1002_00658 0.72 +0.5
715,380 - MIT1002_00658 0.74 +0.8
715,381 + MIT1002_00658 0.74 -0.2
715,383 + MIT1002_00658 0.74 -0.2
715,389 - MIT1002_00658 0.75 -0.4
715,389 - MIT1002_00658 0.75 +0.7
715,391 - MIT1002_00658 0.75 -0.8
715,440 + MIT1002_00658 0.82 -0.3
715,441 + MIT1002_00658 0.82 +1.1
715,441 + MIT1002_00658 0.82 -0.6
715,448 - MIT1002_00658 0.83 -0.4
715,479 + MIT1002_00658 0.87 +0.5
715,486 - MIT1002_00658 0.88 -1.6
715,498 + +0.5
715,506 - -0.0
715,529 + -1.8
715,591 - -0.4
715,609 - -0.7
715,618 - -0.7
715,662 + +0.3
715,753 - -0.1
715,755 - +0.4
715,798 - +0.1
715,799 + +1.5
715,974 - MIT1002_00659 0.12 +1.9
716,139 - MIT1002_00659 0.18 -1.7
716,224 + MIT1002_00659 0.21 +0.1
716,240 - MIT1002_00659 0.22 -0.5
716,328 - MIT1002_00659 0.25 +0.9
716,385 - MIT1002_00659 0.27 +0.7
716,411 + MIT1002_00659 0.28 -1.3
716,411 + MIT1002_00659 0.28 +0.8
716,419 - MIT1002_00659 0.28 -2.2
716,419 - MIT1002_00659 0.28 +0.2
716,424 + MIT1002_00659 0.28 +0.3
716,454 + MIT1002_00659 0.29 +0.1
716,532 + MIT1002_00659 0.32 +0.7
716,534 + MIT1002_00659 0.32 +0.1
716,542 - MIT1002_00659 0.32 +0.5
716,555 - MIT1002_00659 0.33 +1.2
716,555 - MIT1002_00659 0.33 +0.2
716,562 - MIT1002_00659 0.33 -0.9
716,567 - MIT1002_00659 0.33 -0.4

Or see this region's nucleotide sequence