Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00604

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00602 and MIT1002_00603 are separated by 27 nucleotidesMIT1002_00603 and MIT1002_00604 are separated by 20 nucleotidesMIT1002_00604 and MIT1002_00605 overlap by 11 nucleotides MIT1002_00602: MIT1002_00602 - hypothetical protein, at 655,263 to 655,595 _00602 MIT1002_00603: MIT1002_00603 - hypothetical protein, at 655,623 to 656,162 _00603 MIT1002_00604: MIT1002_00604 - hypothetical protein, at 656,183 to 656,878 _00604 MIT1002_00605: MIT1002_00605 - Cation efflux system protein CzcA, at 656,868 to 660,011 _00605 Position (kb) 656 657Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 655.224 kb on + strandat 655.228 kb on + strandat 655.232 kb on - strandat 655.232 kb on - strandat 655.244 kb on - strandat 655.247 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.261 kb on - strandat 655.261 kb on - strandat 655.281 kb on - strandat 655.352 kb on + strand, within MIT1002_00602at 655.574 kb on - strandat 655.629 kb on + strandat 655.675 kb on + strandat 655.675 kb on + strandat 655.675 kb on + strandat 655.683 kb on - strand, within MIT1002_00603at 655.730 kb on + strand, within MIT1002_00603at 655.738 kb on - strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.771 kb on + strand, within MIT1002_00603at 655.774 kb on - strand, within MIT1002_00603at 655.827 kb on + strand, within MIT1002_00603at 655.840 kb on + strand, within MIT1002_00603at 655.893 kb on + strand, within MIT1002_00603at 656.030 kb on + strand, within MIT1002_00603at 656.138 kb on - strandat 656.214 kb on - strandat 656.237 kb on + strandat 656.245 kb on - strandat 656.255 kb on - strand, within MIT1002_00604at 656.255 kb on - strand, within MIT1002_00604at 656.311 kb on + strand, within MIT1002_00604at 656.323 kb on - strand, within MIT1002_00604at 656.336 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.422 kb on + strand, within MIT1002_00604at 656.447 kb on + strand, within MIT1002_00604at 656.447 kb on + strand, within MIT1002_00604at 656.452 kb on + strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.457 kb on + strand, within MIT1002_00604at 656.562 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604at 656.602 kb on - strand, within MIT1002_00604at 656.602 kb on - strand, within MIT1002_00604at 656.644 kb on - strand, within MIT1002_00604at 656.646 kb on - strand, within MIT1002_00604at 656.748 kb on - strand, within MIT1002_00604at 656.762 kb on - strand, within MIT1002_00604at 656.809 kb on + strandat 656.819 kb on + strandat 656.819 kb on + strandat 656.824 kb on + strandat 656.868 kb on + strandat 656.894 kb on - strandat 656.954 kb on - strandat 656.963 kb on + strandat 656.963 kb on + strandat 657.031 kb on - strandat 657.075 kb on + strandat 657.087 kb on + strandat 657.095 kb on - strandat 657.095 kb on - strandat 657.095 kb on - strandat 657.108 kb on + strandat 657.134 kb on + strandat 657.134 kb on + strandat 657.142 kb on - strandat 657.142 kb on - strandat 657.142 kb on - strandat 657.148 kb on + strandat 657.190 kb on + strand, within MIT1002_00605at 657.192 kb on + strand, within MIT1002_00605at 657.203 kb on - strand, within MIT1002_00605at 657.445 kb on + strand, within MIT1002_00605at 657.447 kb on + strand, within MIT1002_00605at 657.538 kb on - strand, within MIT1002_00605at 657.538 kb on - strand, within MIT1002_00605at 657.627 kb on + strand, within MIT1002_00605at 657.754 kb on - strand, within MIT1002_00605at 657.778 kb on - strand, within MIT1002_00605at 657.788 kb on + strand, within MIT1002_00605at 657.796 kb on - strand, within MIT1002_00605

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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655,224 + -0.1
655,228 + +0.3
655,232 - -0.7
655,232 - +0.6
655,244 - -1.8
655,247 + +1.1
655,253 + -0.1
655,253 + +0.3
655,253 + +0.5
655,253 + -0.4
655,261 - +0.0
655,261 - -1.5
655,281 - -0.5
655,352 + MIT1002_00602 0.27 -0.2
655,574 - -1.1
655,629 + -0.8
655,675 + -0.3
655,675 + +0.2
655,675 + -0.5
655,683 - MIT1002_00603 0.11 -0.6
655,730 + MIT1002_00603 0.20 +0.8
655,738 - MIT1002_00603 0.21 -1.1
655,754 + MIT1002_00603 0.24 +10.6
655,754 + MIT1002_00603 0.24 -2.1
655,754 + MIT1002_00603 0.24 -1.4
655,771 + MIT1002_00603 0.27 -0.6
655,774 - MIT1002_00603 0.28 -1.6
655,827 + MIT1002_00603 0.38 -1.7
655,840 + MIT1002_00603 0.40 -0.3
655,893 + MIT1002_00603 0.50 -0.2
656,030 + MIT1002_00603 0.75 -0.9
656,138 - -0.4
656,214 - -0.2
656,237 + +0.1
656,245 - +0.6
656,255 - MIT1002_00604 0.10 -1.7
656,255 - MIT1002_00604 0.10 -0.8
656,311 + MIT1002_00604 0.18 -0.3
656,323 - MIT1002_00604 0.20 -0.7
656,336 + MIT1002_00604 0.22 -0.6
656,341 + MIT1002_00604 0.23 -0.9
656,341 + MIT1002_00604 0.23 -0.3
656,341 + MIT1002_00604 0.23 +0.3
656,341 + MIT1002_00604 0.23 -2.0
656,349 - MIT1002_00604 0.24 -0.8
656,349 - MIT1002_00604 0.24 -0.6
656,349 - MIT1002_00604 0.24 +1.0
656,422 + MIT1002_00604 0.34 -0.9
656,447 + MIT1002_00604 0.38 +2.2
656,447 + MIT1002_00604 0.38 -0.2
656,452 + MIT1002_00604 0.39 +0.1
656,455 - MIT1002_00604 0.39 +0.1
656,455 - MIT1002_00604 0.39 -1.7
656,455 - MIT1002_00604 0.39 -0.9
656,457 + MIT1002_00604 0.39 +0.0
656,562 + MIT1002_00604 0.54 +0.4
656,594 + MIT1002_00604 0.59 +0.4
656,594 + MIT1002_00604 0.59 +0.8
656,594 + MIT1002_00604 0.59 +2.4
656,602 - MIT1002_00604 0.60 +0.1
656,602 - MIT1002_00604 0.60 -0.2
656,644 - MIT1002_00604 0.66 -0.3
656,646 - MIT1002_00604 0.67 -0.2
656,748 - MIT1002_00604 0.81 +0.7
656,762 - MIT1002_00604 0.83 -0.4
656,809 + +0.2
656,819 + -0.8
656,819 + +0.4
656,824 + +0.4
656,868 + -0.3
656,894 - -1.2
656,954 - -0.1
656,963 + -0.2
656,963 + -0.2
657,031 - -0.1
657,075 + +0.1
657,087 + -1.4
657,095 - +0.0
657,095 - +0.1
657,095 - -0.8
657,108 + -1.4
657,134 + -1.1
657,134 + -0.2
657,142 - -0.2
657,142 - +0.1
657,142 - -0.5
657,148 + +0.0
657,190 + MIT1002_00605 0.10 -1.0
657,192 + MIT1002_00605 0.10 -0.6
657,203 - MIT1002_00605 0.11 -0.1
657,445 + MIT1002_00605 0.18 +0.5
657,447 + MIT1002_00605 0.18 +1.8
657,538 - MIT1002_00605 0.21 -0.8
657,538 - MIT1002_00605 0.21 -0.4
657,627 + MIT1002_00605 0.24 -0.9
657,754 - MIT1002_00605 0.28 +0.6
657,778 - MIT1002_00605 0.29 -1.0
657,788 + MIT1002_00605 0.29 -1.5
657,796 - MIT1002_00605 0.30 -2.4

Or see this region's nucleotide sequence