Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00585 and MIT1002_00586 are separated by 184 nucleotides MIT1002_00586 and MIT1002_00587 are separated by 72 nucleotides MIT1002_00587 and MIT1002_00588 are separated by 11 nucleotides
MIT1002_00585: MIT1002_00585 - UvsW helicase, at 632,103 to 633,470
_00585
MIT1002_00586: MIT1002_00586 - hypothetical protein, at 633,655 to 634,659
_00586
MIT1002_00587: MIT1002_00587 - hypothetical protein, at 634,732 to 635,598
_00587
MIT1002_00588: MIT1002_00588 - hypothetical protein, at 635,610 to 635,894
_00588
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 632.791 kb on + strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.810 kb on + strand, within MIT1002_00585 at 632.824 kb on + strand, within MIT1002_00585 at 632.824 kb on + strand, within MIT1002_00585 at 632.894 kb on + strand, within MIT1002_00585 at 632.905 kb on + strand, within MIT1002_00585 at 632.913 kb on - strand, within MIT1002_00585 at 632.945 kb on - strand, within MIT1002_00585 at 632.955 kb on - strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.107 kb on + strand, within MIT1002_00585 at 633.107 kb on + strand, within MIT1002_00585 at 633.115 kb on - strand, within MIT1002_00585 at 633.145 kb on - strand, within MIT1002_00585 at 633.146 kb on + strand, within MIT1002_00585 at 633.147 kb on + strand, within MIT1002_00585 at 633.156 kb on + strand, within MIT1002_00585 at 633.185 kb on + strand, within MIT1002_00585 at 633.185 kb on + strand, within MIT1002_00585 at 633.325 kb on - strand, within MIT1002_00585 at 633.387 kb on + strand at 633.447 kb on - strand at 633.482 kb on - strand at 633.494 kb on - strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.509 kb on + strand at 633.517 kb on - strand at 633.517 kb on - strand at 633.629 kb on - strand at 633.655 kb on - strand at 633.784 kb on + strand, within MIT1002_00586 at 633.793 kb on - strand, within MIT1002_00586 at 633.797 kb on - strand, within MIT1002_00586 at 633.797 kb on - strand, within MIT1002_00586 at 633.872 kb on - strand, within MIT1002_00586 at 633.947 kb on - strand, within MIT1002_00586 at 633.960 kb on - strand, within MIT1002_00586 at 633.960 kb on - strand, within MIT1002_00586 at 633.973 kb on + strand, within MIT1002_00586 at 633.981 kb on - strand, within MIT1002_00586 at 634.007 kb on + strand, within MIT1002_00586 at 634.025 kb on - strand, within MIT1002_00586 at 634.028 kb on + strand, within MIT1002_00586 at 634.031 kb on + strand, within MIT1002_00586 at 634.039 kb on - strand, within MIT1002_00586 at 634.068 kb on - strand, within MIT1002_00586 at 634.096 kb on + strand, within MIT1002_00586 at 634.096 kb on - strand, within MIT1002_00586 at 634.122 kb on + strand, within MIT1002_00586 at 634.125 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.150 kb on - strand, within MIT1002_00586 at 634.150 kb on - strand, within MIT1002_00586 at 634.157 kb on - strand, within MIT1002_00586 at 634.157 kb on - strand, within MIT1002_00586 at 634.166 kb on - strand, within MIT1002_00586 at 634.209 kb on + strand, within MIT1002_00586 at 634.219 kb on + strand, within MIT1002_00586 at 634.219 kb on + strand, within MIT1002_00586 at 634.223 kb on - strand, within MIT1002_00586 at 634.242 kb on + strand, within MIT1002_00586 at 634.242 kb on + strand, within MIT1002_00586 at 634.247 kb on + strand, within MIT1002_00586 at 634.257 kb on + strand, within MIT1002_00586 at 634.257 kb on + strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.291 kb on + strand, within MIT1002_00586 at 634.307 kb on - strand, within MIT1002_00586 at 634.309 kb on + strand, within MIT1002_00586 at 634.317 kb on - strand, within MIT1002_00586 at 634.326 kb on + strand, within MIT1002_00586 at 634.360 kb on + strand, within MIT1002_00586 at 634.418 kb on + strand, within MIT1002_00586 at 634.418 kb on + strand, within MIT1002_00586 at 634.421 kb on - strand, within MIT1002_00586 at 634.426 kb on - strand, within MIT1002_00586 at 634.444 kb on - strand, within MIT1002_00586 at 634.492 kb on + strand, within MIT1002_00586 at 634.515 kb on + strand, within MIT1002_00586 at 634.523 kb on - strand, within MIT1002_00586 at 634.539 kb on - strand, within MIT1002_00586 at 634.579 kb on + strand at 634.589 kb on + strand at 634.592 kb on - strand at 634.592 kb on - strand at 634.592 kb on - strand at 634.618 kb on - strand at 634.661 kb on - strand at 634.663 kb on + strand at 634.679 kb on - strand at 634.821 kb on - strand, within MIT1002_00587 at 634.839 kb on + strand, within MIT1002_00587 at 634.944 kb on + strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.981 kb on - strand, within MIT1002_00587 at 634.981 kb on - strand, within MIT1002_00587 at 635.086 kb on - strand, within MIT1002_00587 at 635.106 kb on - strand, within MIT1002_00587 at 635.142 kb on - strand, within MIT1002_00587 at 635.196 kb on - strand, within MIT1002_00587 at 635.208 kb on - strand, within MIT1002_00587 at 635.213 kb on - strand, within MIT1002_00587 at 635.236 kb on + strand, within MIT1002_00587 at 635.244 kb on - strand, within MIT1002_00587 at 635.302 kb on - strand, within MIT1002_00587 at 635.313 kb on + strand, within MIT1002_00587 at 635.338 kb on + strand, within MIT1002_00587 at 635.339 kb on + strand, within MIT1002_00587 at 635.350 kb on + strand, within MIT1002_00587 at 635.375 kb on + strand, within MIT1002_00587 at 635.472 kb on - strand, within MIT1002_00587 at 635.503 kb on + strand, within MIT1002_00587 at 635.548 kb on + strand at 635.556 kb on - strand at 635.565 kb on + strand at 635.585 kb on + strand at 635.585 kb on + strand at 635.601 kb on - strand at 635.641 kb on - strand, within MIT1002_00588
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 632,791 + MIT1002_00585 0.50 +1.0 632,799 - MIT1002_00585 0.51 +1.5 632,799 - MIT1002_00585 0.51 -0.6 632,799 - MIT1002_00585 0.51 +0.3 632,810 + MIT1002_00585 0.52 +2.0 632,824 + MIT1002_00585 0.53 +0.5 632,824 + MIT1002_00585 0.53 +0.8 632,894 + MIT1002_00585 0.58 +1.4 632,905 + MIT1002_00585 0.59 -2.5 632,913 - MIT1002_00585 0.59 -1.1 632,945 - MIT1002_00585 0.62 +1.3 632,955 - MIT1002_00585 0.62 +0.1 633,062 + MIT1002_00585 0.70 -0.2 633,062 + MIT1002_00585 0.70 -0.7 633,062 + MIT1002_00585 0.70 -0.0 633,107 + MIT1002_00585 0.73 -0.3 633,107 + MIT1002_00585 0.73 -0.7 633,115 - MIT1002_00585 0.74 +2.9 633,145 - MIT1002_00585 0.76 +0.3 633,146 + MIT1002_00585 0.76 -0.7 633,147 + MIT1002_00585 0.76 -0.8 633,156 + MIT1002_00585 0.77 -1.1 633,185 + MIT1002_00585 0.79 +2.4 633,185 + MIT1002_00585 0.79 +1.1 633,325 - MIT1002_00585 0.89 -0.3 633,387 + -0.1 633,447 - -0.8 633,482 - +2.1 633,494 - -0.0 633,499 + +0.8 633,499 + +1.1 633,499 + +1.1 633,499 + +0.3 633,499 + -1.6 633,499 + -0.8 633,499 + -0.0 633,499 + +3.0 633,507 - -1.2 633,507 - +0.1 633,507 - +0.6 633,507 - -0.9 633,507 - -0.4 633,507 - +0.6 633,509 + -1.4 633,517 - +0.1 633,517 - -1.0 633,629 - +0.9 633,655 - -0.4 633,784 + MIT1002_00586 0.13 -1.4 633,793 - MIT1002_00586 0.14 -0.3 633,797 - MIT1002_00586 0.14 -2.1 633,797 - MIT1002_00586 0.14 -0.0 633,872 - MIT1002_00586 0.22 -1.3 633,947 - MIT1002_00586 0.29 -0.8 633,960 - MIT1002_00586 0.30 -0.6 633,960 - MIT1002_00586 0.30 +0.1 633,973 + MIT1002_00586 0.32 -0.1 633,981 - MIT1002_00586 0.32 +1.4 634,007 + MIT1002_00586 0.35 +0.8 634,025 - MIT1002_00586 0.37 +0.6 634,028 + MIT1002_00586 0.37 -0.6 634,031 + MIT1002_00586 0.37 -0.0 634,039 - MIT1002_00586 0.38 -0.5 634,068 - MIT1002_00586 0.41 -0.3 634,096 + MIT1002_00586 0.44 -0.7 634,096 - MIT1002_00586 0.44 +1.4 634,122 + MIT1002_00586 0.46 -0.2 634,125 + MIT1002_00586 0.47 +0.6 634,142 + MIT1002_00586 0.48 +0.6 634,142 + MIT1002_00586 0.48 +0.3 634,142 + MIT1002_00586 0.48 -1.1 634,142 + MIT1002_00586 0.48 -1.7 634,150 - MIT1002_00586 0.49 -2.3 634,150 - MIT1002_00586 0.49 -0.7 634,157 - MIT1002_00586 0.50 -0.3 634,157 - MIT1002_00586 0.50 -1.0 634,166 - MIT1002_00586 0.51 -0.5 634,209 + MIT1002_00586 0.55 -0.7 634,219 + MIT1002_00586 0.56 -2.7 634,219 + MIT1002_00586 0.56 +2.0 634,223 - MIT1002_00586 0.57 -2.0 634,242 + MIT1002_00586 0.58 -1.4 634,242 + MIT1002_00586 0.58 -0.8 634,247 + MIT1002_00586 0.59 -1.6 634,257 + MIT1002_00586 0.60 +1.3 634,257 + MIT1002_00586 0.60 -1.1 634,265 - MIT1002_00586 0.61 -0.7 634,265 - MIT1002_00586 0.61 +0.4 634,265 - MIT1002_00586 0.61 +0.8 634,265 - MIT1002_00586 0.61 -1.4 634,291 + MIT1002_00586 0.63 -0.8 634,307 - MIT1002_00586 0.65 +1.1 634,309 + MIT1002_00586 0.65 +0.5 634,317 - MIT1002_00586 0.66 -0.4 634,326 + MIT1002_00586 0.67 -0.4 634,360 + MIT1002_00586 0.70 -1.8 634,418 + MIT1002_00586 0.76 -0.5 634,418 + MIT1002_00586 0.76 +2.2 634,421 - MIT1002_00586 0.76 -0.2 634,426 - MIT1002_00586 0.77 -0.6 634,444 - MIT1002_00586 0.79 -0.7 634,492 + MIT1002_00586 0.83 -1.6 634,515 + MIT1002_00586 0.86 -0.4 634,523 - MIT1002_00586 0.86 +2.1 634,539 - MIT1002_00586 0.88 +0.4 634,579 + -2.7 634,589 + -0.0 634,592 - -1.0 634,592 - +0.2 634,592 - +0.4 634,618 - +0.6 634,661 - -0.3 634,663 + -0.5 634,679 - +0.1 634,821 - MIT1002_00587 0.10 +1.1 634,839 + MIT1002_00587 0.12 +0.6 634,944 + MIT1002_00587 0.24 -0.4 634,952 - MIT1002_00587 0.25 +0.0 634,952 - MIT1002_00587 0.25 -0.5 634,952 - MIT1002_00587 0.25 -0.7 634,981 - MIT1002_00587 0.29 +0.2 634,981 - MIT1002_00587 0.29 -0.9 635,086 - MIT1002_00587 0.41 -1.8 635,106 - MIT1002_00587 0.43 -0.6 635,142 - MIT1002_00587 0.47 +0.4 635,196 - MIT1002_00587 0.54 +0.4 635,208 - MIT1002_00587 0.55 -0.5 635,213 - MIT1002_00587 0.55 -2.4 635,236 + MIT1002_00587 0.58 +0.4 635,244 - MIT1002_00587 0.59 -1.0 635,302 - MIT1002_00587 0.66 -0.2 635,313 + MIT1002_00587 0.67 -0.7 635,338 + MIT1002_00587 0.70 +0.2 635,339 + MIT1002_00587 0.70 +0.3 635,350 + MIT1002_00587 0.71 -1.3 635,375 + MIT1002_00587 0.74 +0.0 635,472 - MIT1002_00587 0.85 -0.5 635,503 + MIT1002_00587 0.89 +1.0 635,548 + -2.0 635,556 - -0.4 635,565 + +0.5 635,585 + +1.5 635,585 + +1.4 635,601 - -0.3 635,641 - MIT1002_00588 0.11 +0.6
Or see this region's nucleotide sequence