Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00577 and MIT1002_00578 are separated by 280 nucleotides MIT1002_00578 and MIT1002_00579 are separated by 111 nucleotides
MIT1002_00577: MIT1002_00577 - Xaa-Pro dipeptidase, at 623,510 to 624,841
_00577
MIT1002_00578: MIT1002_00578 - ZIP Zinc transporter, at 625,122 to 625,838
_00578
MIT1002_00579: MIT1002_00579 - Octaprenyl-diphosphate synthase, at 625,950 to 626,930
_00579
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 624.140 kb on + strand, within MIT1002_00577 at 624.196 kb on + strand, within MIT1002_00577 at 624.301 kb on - strand, within MIT1002_00577 at 624.352 kb on - strand, within MIT1002_00577 at 624.353 kb on + strand, within MIT1002_00577 at 624.356 kb on - strand, within MIT1002_00577 at 624.360 kb on + strand, within MIT1002_00577 at 624.383 kb on + strand, within MIT1002_00577 at 624.396 kb on - strand, within MIT1002_00577 at 624.516 kb on + strand, within MIT1002_00577 at 624.534 kb on + strand, within MIT1002_00577 at 624.582 kb on + strand, within MIT1002_00577 at 624.583 kb on + strand, within MIT1002_00577 at 624.583 kb on + strand, within MIT1002_00577 at 624.604 kb on - strand, within MIT1002_00577 at 624.636 kb on + strand, within MIT1002_00577 at 624.638 kb on - strand, within MIT1002_00577 at 624.665 kb on + strand, within MIT1002_00577 at 624.696 kb on + strand, within MIT1002_00577 at 624.696 kb on + strand, within MIT1002_00577 at 624.696 kb on + strand, within MIT1002_00577 at 624.705 kb on - strand, within MIT1002_00577 at 624.738 kb on + strand at 624.746 kb on - strand at 624.889 kb on + strand at 624.894 kb on + strand at 624.894 kb on + strand at 624.894 kb on + strand at 624.902 kb on - strand at 624.902 kb on - strand at 624.902 kb on - strand at 625.061 kb on + strand at 625.099 kb on - strand at 625.121 kb on - strand at 625.206 kb on + strand, within MIT1002_00578 at 625.220 kb on + strand, within MIT1002_00578 at 625.247 kb on - strand, within MIT1002_00578 at 625.273 kb on - strand, within MIT1002_00578 at 625.294 kb on + strand, within MIT1002_00578 at 625.313 kb on - strand, within MIT1002_00578 at 625.323 kb on - strand, within MIT1002_00578 at 625.323 kb on - strand, within MIT1002_00578 at 625.388 kb on - strand, within MIT1002_00578 at 625.436 kb on + strand, within MIT1002_00578 at 625.517 kb on - strand, within MIT1002_00578 at 625.543 kb on + strand, within MIT1002_00578 at 625.552 kb on - strand, within MIT1002_00578 at 625.552 kb on - strand, within MIT1002_00578 at 625.588 kb on + strand, within MIT1002_00578 at 625.596 kb on - strand, within MIT1002_00578 at 625.625 kb on + strand, within MIT1002_00578 at 625.633 kb on - strand, within MIT1002_00578 at 625.636 kb on + strand, within MIT1002_00578 at 625.675 kb on + strand, within MIT1002_00578 at 625.685 kb on - strand, within MIT1002_00578 at 625.685 kb on - strand, within MIT1002_00578 at 625.685 kb on - strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.690 kb on + strand, within MIT1002_00578 at 625.698 kb on - strand, within MIT1002_00578 at 625.698 kb on - strand, within MIT1002_00578 at 625.698 kb on - strand, within MIT1002_00578 at 625.700 kb on - strand, within MIT1002_00578 at 625.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 624,140 + MIT1002_00577 0.47 +0.2 624,196 + MIT1002_00577 0.52 -0.1 624,301 - MIT1002_00577 0.59 +0.9 624,352 - MIT1002_00577 0.63 -0.1 624,353 + MIT1002_00577 0.63 +0.6 624,356 - MIT1002_00577 0.64 +1.4 624,360 + MIT1002_00577 0.64 +0.4 624,383 + MIT1002_00577 0.66 -0.8 624,396 - MIT1002_00577 0.67 -1.1 624,516 + MIT1002_00577 0.76 -0.3 624,534 + MIT1002_00577 0.77 -0.2 624,582 + MIT1002_00577 0.80 +0.3 624,583 + MIT1002_00577 0.81 -0.5 624,583 + MIT1002_00577 0.81 +0.0 624,604 - MIT1002_00577 0.82 +0.6 624,636 + MIT1002_00577 0.85 -2.1 624,638 - MIT1002_00577 0.85 -0.1 624,665 + MIT1002_00577 0.87 -2.0 624,696 + MIT1002_00577 0.89 +0.4 624,696 + MIT1002_00577 0.89 -0.3 624,696 + MIT1002_00577 0.89 +0.1 624,705 - MIT1002_00577 0.90 +0.3 624,738 + -0.3 624,746 - -0.6 624,889 + -0.4 624,894 + +0.1 624,894 + +1.9 624,894 + -0.9 624,902 - -1.6 624,902 - +0.9 624,902 - -0.5 625,061 + -1.4 625,099 - -0.5 625,121 - -0.9 625,206 + MIT1002_00578 0.12 -0.9 625,220 + MIT1002_00578 0.14 -0.9 625,247 - MIT1002_00578 0.17 -3.2 625,273 - MIT1002_00578 0.21 +0.4 625,294 + MIT1002_00578 0.24 -0.7 625,313 - MIT1002_00578 0.27 -0.7 625,323 - MIT1002_00578 0.28 +1.2 625,323 - MIT1002_00578 0.28 +1.3 625,388 - MIT1002_00578 0.37 +0.5 625,436 + MIT1002_00578 0.44 -0.6 625,517 - MIT1002_00578 0.55 -0.5 625,543 + MIT1002_00578 0.59 -1.3 625,552 - MIT1002_00578 0.60 -0.1 625,552 - MIT1002_00578 0.60 -0.2 625,588 + MIT1002_00578 0.65 +0.3 625,596 - MIT1002_00578 0.66 +0.2 625,625 + MIT1002_00578 0.70 +1.4 625,633 - MIT1002_00578 0.71 +0.0 625,636 + MIT1002_00578 0.72 +1.5 625,675 + MIT1002_00578 0.77 -0.4 625,685 - MIT1002_00578 0.79 +0.6 625,685 - MIT1002_00578 0.79 -0.4 625,685 - MIT1002_00578 0.79 -1.0 625,690 + MIT1002_00578 0.79 +0.2 625,690 + MIT1002_00578 0.79 -1.3 625,690 + MIT1002_00578 0.79 +0.4 625,690 + MIT1002_00578 0.79 +0.0 625,690 + MIT1002_00578 0.79 -2.7 625,690 + MIT1002_00578 0.79 +1.7 625,698 - MIT1002_00578 0.80 -0.3 625,698 - MIT1002_00578 0.80 -1.0 625,698 - MIT1002_00578 0.80 +0.2 625,700 - MIT1002_00578 0.81 -1.6 625,962 - -0.4
Or see this region's nucleotide sequence