Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00575 and MIT1002_00576 are separated by 495 nucleotides MIT1002_00576 and MIT1002_00577 are separated by 167 nucleotides
MIT1002_00575: MIT1002_00575 - Fatty acid oxidation complex subunit alpha, at 618,633 to 620,783
_00575
MIT1002_00576: MIT1002_00576 - Soluble lytic murein transglycosylase precursor, at 621,279 to 623,342
_00576
MIT1002_00577: MIT1002_00577 - Xaa-Pro dipeptidase, at 623,510 to 624,841
_00577
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 620.286 kb on - strand, within MIT1002_00575 at 620.286 kb on - strand, within MIT1002_00575 at 620.289 kb on + strand, within MIT1002_00575 at 620.301 kb on + strand, within MIT1002_00575 at 620.447 kb on - strand, within MIT1002_00575 at 620.472 kb on + strand, within MIT1002_00575 at 620.481 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.504 kb on - strand, within MIT1002_00575 at 620.534 kb on + strand, within MIT1002_00575 at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.610 kb on + strand at 620.615 kb on + strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.618 kb on - strand at 620.622 kb on + strand at 620.622 kb on + strand at 620.630 kb on - strand at 620.678 kb on - strand at 620.771 kb on - strand at 620.781 kb on - strand at 620.861 kb on + strand at 620.861 kb on + strand at 621.078 kb on + strand at 621.086 kb on - strand at 621.086 kb on - strand at 621.090 kb on + strand at 621.174 kb on - strand at 621.245 kb on - strand at 621.253 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.263 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on + strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.271 kb on - strand at 621.279 kb on - strand at 621.279 kb on - strand at 621.279 kb on - strand at 621.413 kb on + strand at 621.413 kb on + strand at 621.415 kb on + strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.421 kb on - strand at 621.423 kb on - strand at 621.426 kb on + strand at 621.556 kb on - strand, within MIT1002_00576 at 621.563 kb on + strand, within MIT1002_00576 at 621.569 kb on + strand, within MIT1002_00576 at 621.650 kb on + strand, within MIT1002_00576 at 621.652 kb on + strand, within MIT1002_00576 at 621.652 kb on + strand, within MIT1002_00576 at 621.660 kb on - strand, within MIT1002_00576 at 621.683 kb on - strand, within MIT1002_00576 at 621.727 kb on - strand, within MIT1002_00576 at 621.744 kb on + strand, within MIT1002_00576 at 621.744 kb on + strand, within MIT1002_00576 at 621.752 kb on - strand, within MIT1002_00576 at 621.772 kb on - strand, within MIT1002_00576 at 621.970 kb on + strand, within MIT1002_00576 at 622.142 kb on - strand, within MIT1002_00576 at 622.167 kb on + strand, within MIT1002_00576 at 622.178 kb on + strand, within MIT1002_00576 at 622.191 kb on - strand, within MIT1002_00576 at 622.210 kb on + strand, within MIT1002_00576 at 622.218 kb on - strand, within MIT1002_00576 at 622.218 kb on - strand, within MIT1002_00576 at 622.226 kb on - strand, within MIT1002_00576 at 622.231 kb on + strand, within MIT1002_00576 at 622.245 kb on + strand, within MIT1002_00576 at 622.256 kb on + strand, within MIT1002_00576 at 622.283 kb on - strand, within MIT1002_00576 at 622.283 kb on - strand, within MIT1002_00576 at 622.549 kb on - strand, within MIT1002_00576 at 622.554 kb on - strand, within MIT1002_00576 at 622.554 kb on - strand, within MIT1002_00576 at 622.554 kb on - strand, within MIT1002_00576 at 622.570 kb on - strand, within MIT1002_00576 at 622.692 kb on - strand, within MIT1002_00576 at 622.802 kb on - strand, within MIT1002_00576 at 622.918 kb on + strand, within MIT1002_00576 at 622.918 kb on + strand, within MIT1002_00576 at 622.926 kb on - strand, within MIT1002_00576 at 622.948 kb on - strand, within MIT1002_00576 at 622.991 kb on + strand, within MIT1002_00576 at 622.999 kb on - strand, within MIT1002_00576 at 623.027 kb on + strand, within MIT1002_00576 at 623.030 kb on - strand, within MIT1002_00576 at 623.075 kb on - strand, within MIT1002_00576 at 623.106 kb on + strand, within MIT1002_00576 at 623.135 kb on - strand, within MIT1002_00576 at 623.190 kb on - strand at 623.199 kb on + strand at 623.307 kb on - strand at 623.351 kb on + strand at 623.351 kb on + strand at 623.357 kb on + strand at 623.359 kb on - strand at 623.365 kb on + strand at 623.367 kb on - strand at 623.422 kb on - strand at 623.422 kb on - strand at 623.432 kb on - strand at 623.442 kb on + strand at 623.518 kb on + strand at 623.526 kb on - strand at 623.571 kb on + strand at 623.573 kb on + strand at 623.573 kb on + strand at 623.573 kb on + strand at 623.581 kb on - strand at 623.588 kb on + strand at 623.588 kb on + strand at 623.588 kb on + strand at 623.596 kb on - strand at 623.596 kb on - strand at 623.610 kb on + strand at 623.610 kb on + strand at 623.620 kb on + strand at 623.623 kb on - strand at 623.628 kb on - strand at 623.710 kb on + strand, within MIT1002_00577 at 623.712 kb on - strand, within MIT1002_00577 at 623.718 kb on - strand, within MIT1002_00577 at 623.738 kb on - strand, within MIT1002_00577 at 623.738 kb on - strand, within MIT1002_00577 at 623.742 kb on - strand, within MIT1002_00577 at 623.742 kb on - strand, within MIT1002_00577 at 623.834 kb on + strand, within MIT1002_00577 at 623.912 kb on - strand, within MIT1002_00577 at 623.935 kb on - strand, within MIT1002_00577 at 623.945 kb on - strand, within MIT1002_00577 at 624.015 kb on - strand, within MIT1002_00577 at 624.041 kb on + strand, within MIT1002_00577 at 624.100 kb on + strand, within MIT1002_00577 at 624.140 kb on + strand, within MIT1002_00577 at 624.196 kb on + strand, within MIT1002_00577 at 624.301 kb on - strand, within MIT1002_00577
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 620,286 - MIT1002_00575 0.77 +0.2 620,286 - MIT1002_00575 0.77 +1.3 620,289 + MIT1002_00575 0.77 -0.2 620,301 + MIT1002_00575 0.78 +0.9 620,447 - MIT1002_00575 0.84 +0.4 620,472 + MIT1002_00575 0.85 -1.3 620,481 - MIT1002_00575 0.86 +0.3 620,504 - MIT1002_00575 0.87 -1.5 620,504 - MIT1002_00575 0.87 -0.2 620,504 - MIT1002_00575 0.87 -0.7 620,534 + MIT1002_00575 0.88 -0.8 620,610 + +0.2 620,610 + -1.4 620,610 + -0.8 620,610 + -0.7 620,610 + +0.2 620,615 + -0.0 620,618 - +0.9 620,618 - -0.4 620,618 - -0.5 620,618 - -0.5 620,622 + +1.1 620,622 + +0.2 620,630 - -1.5 620,678 - -0.3 620,771 - -1.2 620,781 - +0.4 620,861 + +0.1 620,861 + -3.4 621,078 + -0.0 621,086 - -0.6 621,086 - +0.2 621,090 + -0.4 621,174 - -0.7 621,245 - -0.6 621,253 + -1.5 621,263 + +0.9 621,263 + -0.3 621,263 + -0.2 621,263 + -0.7 621,263 + -0.7 621,263 + +0.1 621,263 + +0.2 621,271 + -0.8 621,271 + +0.4 621,271 + -0.4 621,271 + +0.1 621,271 - +3.9 621,271 - -0.4 621,271 - -0.8 621,271 - -0.8 621,279 - -1.1 621,279 - -1.3 621,279 - +0.5 621,413 + +0.0 621,413 + -2.4 621,415 + +1.2 621,421 - -0.2 621,421 - +0.5 621,421 - -0.9 621,421 - -0.6 621,423 - -1.4 621,426 + +0.7 621,556 - MIT1002_00576 0.13 -0.0 621,563 + MIT1002_00576 0.14 -0.9 621,569 + MIT1002_00576 0.14 -3.7 621,650 + MIT1002_00576 0.18 -1.1 621,652 + MIT1002_00576 0.18 -1.7 621,652 + MIT1002_00576 0.18 +0.4 621,660 - MIT1002_00576 0.18 -0.1 621,683 - MIT1002_00576 0.20 -1.3 621,727 - MIT1002_00576 0.22 -0.3 621,744 + MIT1002_00576 0.23 +0.3 621,744 + MIT1002_00576 0.23 -0.9 621,752 - MIT1002_00576 0.23 -3.1 621,772 - MIT1002_00576 0.24 -0.4 621,970 + MIT1002_00576 0.33 +0.5 622,142 - MIT1002_00576 0.42 -0.7 622,167 + MIT1002_00576 0.43 -0.1 622,178 + MIT1002_00576 0.44 -2.2 622,191 - MIT1002_00576 0.44 -0.7 622,210 + MIT1002_00576 0.45 -1.4 622,218 - MIT1002_00576 0.45 -1.0 622,218 - MIT1002_00576 0.45 +0.5 622,226 - MIT1002_00576 0.46 +0.4 622,231 + MIT1002_00576 0.46 -0.6 622,245 + MIT1002_00576 0.47 -0.1 622,256 + MIT1002_00576 0.47 -0.6 622,283 - MIT1002_00576 0.49 +0.5 622,283 - MIT1002_00576 0.49 -0.1 622,549 - MIT1002_00576 0.62 -0.3 622,554 - MIT1002_00576 0.62 -1.6 622,554 - MIT1002_00576 0.62 -0.6 622,554 - MIT1002_00576 0.62 +0.2 622,570 - MIT1002_00576 0.63 +0.1 622,692 - MIT1002_00576 0.68 -0.9 622,802 - MIT1002_00576 0.74 -0.4 622,918 + MIT1002_00576 0.79 -2.1 622,918 + MIT1002_00576 0.79 +0.7 622,926 - MIT1002_00576 0.80 -0.1 622,948 - MIT1002_00576 0.81 -0.7 622,991 + MIT1002_00576 0.83 +0.6 622,999 - MIT1002_00576 0.83 +0.9 623,027 + MIT1002_00576 0.85 -0.2 623,030 - MIT1002_00576 0.85 -2.3 623,075 - MIT1002_00576 0.87 -0.8 623,106 + MIT1002_00576 0.89 -0.4 623,135 - MIT1002_00576 0.90 +0.6 623,190 - -0.1 623,199 + -0.1 623,307 - +0.8 623,351 + -0.1 623,351 + +1.1 623,357 + -0.3 623,359 - +0.3 623,365 + -1.6 623,367 - -0.2 623,422 - +0.0 623,422 - -0.5 623,432 - +0.1 623,442 + -0.2 623,518 + +0.4 623,526 - +0.2 623,571 + -1.5 623,573 + +0.1 623,573 + -1.2 623,573 + -0.6 623,581 - +0.5 623,588 + +0.5 623,588 + -0.3 623,588 + -1.5 623,596 - +0.9 623,596 - -0.7 623,610 + +0.1 623,610 + -0.6 623,620 + +0.1 623,623 - -0.2 623,628 - +0.3 623,710 + MIT1002_00577 0.15 -0.2 623,712 - MIT1002_00577 0.15 -0.2 623,718 - MIT1002_00577 0.16 -1.4 623,738 - MIT1002_00577 0.17 -0.2 623,738 - MIT1002_00577 0.17 +0.1 623,742 - MIT1002_00577 0.17 +0.6 623,742 - MIT1002_00577 0.17 -0.9 623,834 + MIT1002_00577 0.24 -1.6 623,912 - MIT1002_00577 0.30 +0.1 623,935 - MIT1002_00577 0.32 -1.6 623,945 - MIT1002_00577 0.33 -2.2 624,015 - MIT1002_00577 0.38 -0.2 624,041 + MIT1002_00577 0.40 -0.5 624,100 + MIT1002_00577 0.44 -0.5 624,140 + MIT1002_00577 0.47 +0.2 624,196 + MIT1002_00577 0.52 -0.1 624,301 - MIT1002_00577 0.59 +0.9
Or see this region's nucleotide sequence