Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00302 and MIT1002_00303 are separated by 122 nucleotides MIT1002_00303 and MIT1002_00304 overlap by 26 nucleotides MIT1002_00304 and MIT1002_00305 are separated by 0 nucleotides
MIT1002_00302: MIT1002_00302 - Phosphoethanolamine transferase EptA, at 326,322 to 327,929
_00302
MIT1002_00303: MIT1002_00303 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 328,052 to 329,794
_00303
MIT1002_00304: MIT1002_00304 - SNARE associated Golgi protein, at 329,769 to 330,485
_00304
MIT1002_00305: MIT1002_00305 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 330,486 to 331,220
_00305
Position (kb) 328
329
330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.062 kb on + strand, within MIT1002_00302 at 327.080 kb on - strand, within MIT1002_00302 at 327.108 kb on + strand, within MIT1002_00302 at 327.117 kb on - strand, within MIT1002_00302 at 327.155 kb on + strand, within MIT1002_00302 at 327.189 kb on + strand, within MIT1002_00302 at 327.196 kb on + strand, within MIT1002_00302 at 327.224 kb on - strand, within MIT1002_00302 at 327.232 kb on - strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.281 kb on - strand, within MIT1002_00302 at 327.311 kb on - strand, within MIT1002_00302 at 327.332 kb on - strand, within MIT1002_00302 at 327.387 kb on + strand, within MIT1002_00302 at 327.392 kb on + strand, within MIT1002_00302 at 327.400 kb on - strand, within MIT1002_00302 at 327.438 kb on + strand, within MIT1002_00302 at 327.453 kb on + strand, within MIT1002_00302 at 327.489 kb on - strand, within MIT1002_00302 at 327.574 kb on - strand, within MIT1002_00302 at 327.648 kb on - strand, within MIT1002_00302 at 327.665 kb on + strand, within MIT1002_00302 at 327.705 kb on - strand, within MIT1002_00302 at 327.719 kb on - strand, within MIT1002_00302 at 327.762 kb on - strand, within MIT1002_00302 at 327.772 kb on - strand at 327.807 kb on + strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.831 kb on + strand at 327.887 kb on + strand at 327.947 kb on - strand at 327.947 kb on - strand at 328.075 kb on - strand at 328.098 kb on + strand at 328.149 kb on - strand at 328.162 kb on - strand at 328.170 kb on - strand at 328.170 kb on - strand at 328.170 kb on - strand at 328.171 kb on + strand at 328.178 kb on - strand at 328.237 kb on + strand, within MIT1002_00303 at 328.296 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.301 kb on + strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.445 kb on - strand, within MIT1002_00303 at 328.449 kb on + strand, within MIT1002_00303 at 328.449 kb on + strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.462 kb on - strand, within MIT1002_00303 at 328.472 kb on + strand, within MIT1002_00303 at 328.472 kb on + strand, within MIT1002_00303 at 328.497 kb on + strand, within MIT1002_00303 at 328.541 kb on - strand, within MIT1002_00303 at 328.541 kb on - strand, within MIT1002_00303 at 328.555 kb on - strand, within MIT1002_00303 at 328.582 kb on + strand, within MIT1002_00303 at 328.666 kb on - strand, within MIT1002_00303 at 328.692 kb on + strand, within MIT1002_00303 at 328.742 kb on + strand, within MIT1002_00303 at 328.750 kb on - strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.775 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.830 kb on - strand, within MIT1002_00303 at 328.838 kb on + strand, within MIT1002_00303 at 328.838 kb on + strand, within MIT1002_00303 at 328.852 kb on - strand, within MIT1002_00303 at 328.962 kb on + strand, within MIT1002_00303 at 328.966 kb on - strand, within MIT1002_00303 at 329.007 kb on - strand, within MIT1002_00303 at 329.035 kb on - strand, within MIT1002_00303 at 329.084 kb on - strand, within MIT1002_00303 at 329.084 kb on - strand, within MIT1002_00303 at 329.105 kb on + strand, within MIT1002_00303 at 329.105 kb on + strand, within MIT1002_00303 at 329.110 kb on + strand, within MIT1002_00303 at 329.113 kb on - strand, within MIT1002_00303 at 329.113 kb on - strand, within MIT1002_00303 at 329.118 kb on - strand, within MIT1002_00303 at 329.175 kb on + strand, within MIT1002_00303 at 329.183 kb on - strand, within MIT1002_00303 at 329.183 kb on - strand, within MIT1002_00303 at 329.210 kb on + strand, within MIT1002_00303 at 329.274 kb on + strand, within MIT1002_00303 at 329.282 kb on - strand, within MIT1002_00303 at 329.283 kb on - strand, within MIT1002_00303 at 329.322 kb on + strand, within MIT1002_00303 at 329.327 kb on - strand, within MIT1002_00303 at 329.330 kb on + strand, within MIT1002_00303 at 329.371 kb on - strand, within MIT1002_00303 at 329.373 kb on + strand, within MIT1002_00303 at 329.373 kb on + strand, within MIT1002_00303 at 329.373 kb on + strand, within MIT1002_00303 at 329.373 kb on + strand, within MIT1002_00303 at 329.381 kb on - strand, within MIT1002_00303 at 329.381 kb on - strand, within MIT1002_00303 at 329.500 kb on - strand, within MIT1002_00303 at 329.500 kb on - strand, within MIT1002_00303 at 329.515 kb on - strand, within MIT1002_00303 at 329.534 kb on + strand, within MIT1002_00303 at 329.572 kb on - strand, within MIT1002_00303 at 329.572 kb on - strand, within MIT1002_00303 at 329.586 kb on + strand, within MIT1002_00303 at 329.586 kb on + strand, within MIT1002_00303 at 329.618 kb on + strand, within MIT1002_00303 at 329.618 kb on + strand, within MIT1002_00303 at 329.626 kb on - strand at 329.636 kb on - strand at 329.783 kb on + strand at 329.791 kb on - strand at 329.941 kb on + strand, within MIT1002_00304 at 329.947 kb on + strand, within MIT1002_00304 at 330.013 kb on - strand, within MIT1002_00304 at 330.130 kb on + strand, within MIT1002_00304 at 330.200 kb on - strand, within MIT1002_00304 at 330.205 kb on + strand, within MIT1002_00304 at 330.210 kb on + strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.218 kb on - strand, within MIT1002_00304 at 330.245 kb on - strand, within MIT1002_00304 at 330.269 kb on - strand, within MIT1002_00304 at 330.270 kb on - strand, within MIT1002_00304 at 330.397 kb on - strand, within MIT1002_00304 at 330.577 kb on - strand, within MIT1002_00305 at 330.577 kb on - strand, within MIT1002_00305 at 330.625 kb on + strand, within MIT1002_00305 at 330.677 kb on - strand, within MIT1002_00305 at 330.740 kb on + strand, within MIT1002_00305 at 330.749 kb on - strand, within MIT1002_00305
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 327,062 + MIT1002_00302 0.46 +0.9 327,080 - MIT1002_00302 0.47 -1.2 327,108 + MIT1002_00302 0.49 -0.2 327,117 - MIT1002_00302 0.49 -1.3 327,155 + MIT1002_00302 0.52 +1.4 327,189 + MIT1002_00302 0.54 -0.4 327,196 + MIT1002_00302 0.54 +0.4 327,224 - MIT1002_00302 0.56 -0.8 327,232 - MIT1002_00302 0.57 +0.2 327,273 + MIT1002_00302 0.59 +0.5 327,273 + MIT1002_00302 0.59 -2.0 327,273 + MIT1002_00302 0.59 +0.0 327,281 - MIT1002_00302 0.60 -0.7 327,311 - MIT1002_00302 0.62 -1.7 327,332 - MIT1002_00302 0.63 -0.1 327,387 + MIT1002_00302 0.66 -0.2 327,392 + MIT1002_00302 0.67 +1.3 327,400 - MIT1002_00302 0.67 +0.9 327,438 + MIT1002_00302 0.69 -0.3 327,453 + MIT1002_00302 0.70 +1.4 327,489 - MIT1002_00302 0.73 -0.7 327,574 - MIT1002_00302 0.78 -0.5 327,648 - MIT1002_00302 0.82 -0.1 327,665 + MIT1002_00302 0.84 -2.0 327,705 - MIT1002_00302 0.86 -0.9 327,719 - MIT1002_00302 0.87 -0.0 327,762 - MIT1002_00302 0.90 +1.9 327,772 - -2.1 327,807 + -0.0 327,815 - +1.6 327,815 - +0.3 327,815 - +0.2 327,815 - -1.5 327,815 - +1.6 327,831 + -0.0 327,887 + -1.2 327,947 - -0.9 327,947 - +0.1 328,075 - +0.6 328,098 + +0.1 328,149 - +0.5 328,162 - +0.4 328,170 - -1.3 328,170 - -0.3 328,170 - -0.3 328,171 + -0.2 328,178 - +0.6 328,237 + MIT1002_00303 0.11 +1.3 328,296 + MIT1002_00303 0.14 -0.1 328,297 + MIT1002_00303 0.14 -0.4 328,297 + MIT1002_00303 0.14 -0.4 328,297 + MIT1002_00303 0.14 -0.7 328,301 + MIT1002_00303 0.14 +0.8 328,305 - MIT1002_00303 0.15 -0.5 328,305 - MIT1002_00303 0.15 +0.7 328,305 - MIT1002_00303 0.15 -1.0 328,305 - MIT1002_00303 0.15 +0.6 328,445 - MIT1002_00303 0.23 -0.7 328,449 + MIT1002_00303 0.23 +0.3 328,449 + MIT1002_00303 0.23 +1.5 328,457 - MIT1002_00303 0.23 +0.2 328,457 - MIT1002_00303 0.23 +1.0 328,457 - MIT1002_00303 0.23 -0.8 328,462 - MIT1002_00303 0.24 +0.1 328,472 + MIT1002_00303 0.24 -1.0 328,472 + MIT1002_00303 0.24 +0.3 328,497 + MIT1002_00303 0.26 +0.6 328,541 - MIT1002_00303 0.28 +0.2 328,541 - MIT1002_00303 0.28 +1.6 328,555 - MIT1002_00303 0.29 -0.3 328,582 + MIT1002_00303 0.30 -1.3 328,666 - MIT1002_00303 0.35 +1.5 328,692 + MIT1002_00303 0.37 -0.0 328,742 + MIT1002_00303 0.40 +1.2 328,750 - MIT1002_00303 0.40 +0.2 328,772 + MIT1002_00303 0.41 -0.9 328,772 + MIT1002_00303 0.41 +0.1 328,772 + MIT1002_00303 0.41 -0.5 328,772 + MIT1002_00303 0.41 -0.5 328,772 + MIT1002_00303 0.41 +2.1 328,772 + MIT1002_00303 0.41 -1.9 328,772 + MIT1002_00303 0.41 +0.7 328,775 - MIT1002_00303 0.41 +1.2 328,780 - MIT1002_00303 0.42 -1.3 328,780 - MIT1002_00303 0.42 -1.0 328,780 - MIT1002_00303 0.42 -1.7 328,780 - MIT1002_00303 0.42 +0.5 328,780 - MIT1002_00303 0.42 -0.4 328,830 - MIT1002_00303 0.45 -1.8 328,838 + MIT1002_00303 0.45 -3.0 328,838 + MIT1002_00303 0.45 +0.2 328,852 - MIT1002_00303 0.46 -0.9 328,962 + MIT1002_00303 0.52 -1.5 328,966 - MIT1002_00303 0.52 -0.7 329,007 - MIT1002_00303 0.55 -0.2 329,035 - MIT1002_00303 0.56 -1.7 329,084 - MIT1002_00303 0.59 +0.5 329,084 - MIT1002_00303 0.59 +0.5 329,105 + MIT1002_00303 0.60 -1.7 329,105 + MIT1002_00303 0.60 +0.6 329,110 + MIT1002_00303 0.61 +0.9 329,113 - MIT1002_00303 0.61 -0.1 329,113 - MIT1002_00303 0.61 +0.8 329,118 - MIT1002_00303 0.61 -1.6 329,175 + MIT1002_00303 0.64 -0.7 329,183 - MIT1002_00303 0.65 +0.7 329,183 - MIT1002_00303 0.65 -0.4 329,210 + MIT1002_00303 0.66 -0.3 329,274 + MIT1002_00303 0.70 -0.3 329,282 - MIT1002_00303 0.71 -0.4 329,283 - MIT1002_00303 0.71 +0.9 329,322 + MIT1002_00303 0.73 +1.7 329,327 - MIT1002_00303 0.73 -1.7 329,330 + MIT1002_00303 0.73 -0.7 329,371 - MIT1002_00303 0.76 -1.2 329,373 + MIT1002_00303 0.76 -0.8 329,373 + MIT1002_00303 0.76 +0.7 329,373 + MIT1002_00303 0.76 -0.8 329,373 + MIT1002_00303 0.76 -2.0 329,381 - MIT1002_00303 0.76 -0.9 329,381 - MIT1002_00303 0.76 -2.0 329,500 - MIT1002_00303 0.83 -0.2 329,500 - MIT1002_00303 0.83 +1.2 329,515 - MIT1002_00303 0.84 -0.7 329,534 + MIT1002_00303 0.85 -0.2 329,572 - MIT1002_00303 0.87 -0.7 329,572 - MIT1002_00303 0.87 -0.3 329,586 + MIT1002_00303 0.88 +0.8 329,586 + MIT1002_00303 0.88 +0.1 329,618 + MIT1002_00303 0.90 -0.0 329,618 + MIT1002_00303 0.90 +0.2 329,626 - +0.8 329,636 - -2.0 329,783 + -0.1 329,791 - -1.2 329,941 + MIT1002_00304 0.24 +2.0 329,947 + MIT1002_00304 0.25 -1.3 330,013 - MIT1002_00304 0.34 -2.6 330,130 + MIT1002_00304 0.50 -0.7 330,200 - MIT1002_00304 0.60 -1.3 330,205 + MIT1002_00304 0.61 -0.1 330,210 + MIT1002_00304 0.62 -0.1 330,218 - MIT1002_00304 0.63 +0.3 330,218 - MIT1002_00304 0.63 -0.7 330,218 - MIT1002_00304 0.63 -0.6 330,218 - MIT1002_00304 0.63 +1.0 330,218 - MIT1002_00304 0.63 +1.1 330,218 - MIT1002_00304 0.63 +0.8 330,245 - MIT1002_00304 0.66 -0.1 330,269 - MIT1002_00304 0.70 -1.9 330,270 - MIT1002_00304 0.70 -1.0 330,397 - MIT1002_00304 0.88 +0.5 330,577 - MIT1002_00305 0.12 -0.9 330,577 - MIT1002_00305 0.12 -0.6 330,625 + MIT1002_00305 0.19 -1.3 330,677 - MIT1002_00305 0.26 -0.7 330,740 + MIT1002_00305 0.35 +1.3 330,749 - MIT1002_00305 0.36 -0.0
Or see this region's nucleotide sequence