Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00065

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00064 and MIT1002_00065 overlap by 1 nucleotidesMIT1002_00065 and MIT1002_00066 are separated by 141 nucleotides MIT1002_00064: MIT1002_00064 - L-threonine 3-dehydrogenase, at 70,046 to 71,071 _00064 MIT1002_00065: MIT1002_00065 - Thiosulfate sulfurtransferase GlpE, at 71,071 to 71,382 _00065 MIT1002_00066: MIT1002_00066 - Rhomboid protease GlpG, at 71,524 to 72,387 _00066 Position (kb) 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 70.093 kb on + strandat 70.105 kb on + strandat 70.124 kb on - strandat 70.217 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.278 kb on + strand, within MIT1002_00064at 70.279 kb on + strand, within MIT1002_00064at 70.279 kb on + strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.286 kb on - strand, within MIT1002_00064at 70.349 kb on - strand, within MIT1002_00064at 70.380 kb on + strand, within MIT1002_00064at 70.478 kb on - strand, within MIT1002_00064at 70.505 kb on + strand, within MIT1002_00064at 70.557 kb on - strand, within MIT1002_00064at 70.605 kb on - strand, within MIT1002_00064at 70.630 kb on + strand, within MIT1002_00064at 70.644 kb on + strand, within MIT1002_00064at 70.652 kb on - strand, within MIT1002_00064at 70.803 kb on - strand, within MIT1002_00064at 70.828 kb on + strand, within MIT1002_00064at 70.839 kb on - strand, within MIT1002_00064at 70.918 kb on + strand, within MIT1002_00064at 70.967 kb on - strand, within MIT1002_00064at 71.039 kb on - strandat 71.039 kb on - strandat 71.122 kb on + strand, within MIT1002_00065at 71.130 kb on - strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.170 kb on - strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.254 kb on + strand, within MIT1002_00065at 71.403 kb on - strandat 71.453 kb on + strandat 71.461 kb on - strandat 71.461 kb on - strandat 71.479 kb on - strandat 71.609 kb on + strandat 71.609 kb on + strandat 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.651 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.703 kb on + strand, within MIT1002_00066at 71.826 kb on - strand, within MIT1002_00066at 72.019 kb on - strand, within MIT1002_00066at 72.064 kb on - strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.135 kb on - strand, within MIT1002_00066at 72.135 kb on - strand, within MIT1002_00066at 72.169 kb on + strand, within MIT1002_00066at 72.177 kb on - strand, within MIT1002_00066at 72.225 kb on - strand, within MIT1002_00066at 72.271 kb on + strand, within MIT1002_00066at 72.358 kb on + strandat 72.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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70,093 + -2.9
70,105 + +0.2
70,124 - -1.0
70,217 + MIT1002_00064 0.17 +0.5
70,278 + MIT1002_00064 0.23 +0.1
70,278 + MIT1002_00064 0.23 -0.5
70,278 + MIT1002_00064 0.23 -0.5
70,278 + MIT1002_00064 0.23 -0.6
70,279 + MIT1002_00064 0.23 -1.0
70,279 + MIT1002_00064 0.23 +0.5
70,286 - MIT1002_00064 0.23 -0.6
70,286 - MIT1002_00064 0.23 +0.9
70,286 - MIT1002_00064 0.23 +0.2
70,286 - MIT1002_00064 0.23 -0.4
70,349 - MIT1002_00064 0.30 +0.5
70,380 + MIT1002_00064 0.33 -0.2
70,478 - MIT1002_00064 0.42 +0.4
70,505 + MIT1002_00064 0.45 -0.4
70,557 - MIT1002_00064 0.50 +0.5
70,605 - MIT1002_00064 0.54 -0.6
70,630 + MIT1002_00064 0.57 -1.4
70,644 + MIT1002_00064 0.58 +0.0
70,652 - MIT1002_00064 0.59 -0.5
70,803 - MIT1002_00064 0.74 +0.8
70,828 + MIT1002_00064 0.76 -0.1
70,839 - MIT1002_00064 0.77 +0.0
70,918 + MIT1002_00064 0.85 -0.1
70,967 - MIT1002_00064 0.90 +0.1
71,039 - -0.3
71,039 - +1.0
71,122 + MIT1002_00065 0.16 -0.4
71,130 - MIT1002_00065 0.19 +0.7
71,149 + MIT1002_00065 0.25 +0.8
71,149 + MIT1002_00065 0.25 +0.7
71,170 - MIT1002_00065 0.32 +0.1
71,175 + MIT1002_00065 0.33 +1.4
71,175 + MIT1002_00065 0.33 +0.4
71,254 + MIT1002_00065 0.59 -0.9
71,403 - +0.3
71,453 + +0.1
71,461 - +1.4
71,461 - -0.1
71,479 - -1.3
71,609 + -1.7
71,609 + -0.3
71,617 - MIT1002_00066 0.11 -0.6
71,617 - MIT1002_00066 0.11 -1.3
71,617 - MIT1002_00066 0.11 +3.1
71,617 - MIT1002_00066 0.11 +1.2
71,651 + MIT1002_00066 0.15 -0.2
71,659 + MIT1002_00066 0.16 -1.2
71,659 + MIT1002_00066 0.16 -0.6
71,703 + MIT1002_00066 0.21 -2.0
71,826 - MIT1002_00066 0.35 -1.2
72,019 - MIT1002_00066 0.57 -0.9
72,064 - MIT1002_00066 0.62 +0.6
72,127 + MIT1002_00066 0.70 -0.1
72,127 + MIT1002_00066 0.70 -1.0
72,127 + MIT1002_00066 0.70 -1.1
72,135 - MIT1002_00066 0.71 +1.5
72,135 - MIT1002_00066 0.71 -1.1
72,169 + MIT1002_00066 0.75 -0.6
72,177 - MIT1002_00066 0.76 -1.3
72,225 - MIT1002_00066 0.81 -0.9
72,271 + MIT1002_00066 0.86 -0.4
72,358 + -0.4
72,365 - +0.2

Or see this region's nucleotide sequence