Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03535

Experiment: biofilm; Day2; NLDM;

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03525 and LRK53_RS03530 are separated by 26 nucleotidesLRK53_RS03530 and LRK53_RS03535 are separated by 140 nucleotidesLRK53_RS03535 and LRK53_RS03540 are separated by 222 nucleotidesLRK53_RS03540 and LRK53_RS03545 are separated by 7 nucleotides LRK53_RS03525: LRK53_RS03525 - acid phosphatase, at 832,155 to 833,849 _RS03525 LRK53_RS03530: LRK53_RS03530 - Lrp/AsnC family transcriptional regulator, at 833,876 to 834,370 _RS03530 LRK53_RS03535: LRK53_RS03535 - DMT family transporter, at 834,511 to 835,443 _RS03535 LRK53_RS03540: LRK53_RS03540 - FmdE family protein, at 835,666 to 836,280 _RS03540 LRK53_RS03545: LRK53_RS03545 - DUF2249 domain-containing protein, at 836,288 to 836,554 _RS03545 Position (kb) 834 835 836Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 834.295 kb on - strand, within LRK53_RS03530at 834.350 kb on + strandat 834.350 kb on + strandat 834.350 kb on + strandat 834.351 kb on - strandat 834.351 kb on - strandat 834.351 kb on - strandat 834.425 kb on + strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.450 kb on - strandat 834.450 kb on - strandat 834.450 kb on - strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.475 kb on - strandat 834.475 kb on - strandat 834.475 kb on - strandat 834.516 kb on + strandat 834.587 kb on - strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.602 kb on - strandat 834.602 kb on - strandat 834.602 kb on - strandat 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.761 kb on - strand, within LRK53_RS03535at 834.761 kb on - strand, within LRK53_RS03535at 834.778 kb on + strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.258 kb on + strand, within LRK53_RS03535at 835.259 kb on - strand, within LRK53_RS03535at 835.259 kb on - strand, within LRK53_RS03535at 835.259 kb on - strand, within LRK53_RS03535at 835.259 kb on - strand, within LRK53_RS03535at 835.919 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.091 kb on - strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.261 kb on + strandat 836.261 kb on + strandat 836.262 kb on - strandat 836.273 kb on + strandat 836.273 kb on + strandat 836.273 kb on + strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.352 kb on + strand, within LRK53_RS03545at 836.352 kb on + strand, within LRK53_RS03545at 836.353 kb on - strand, within LRK53_RS03545at 836.353 kb on - strand, within LRK53_RS03545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
remove
833,623 + LRK53_RS03525 0.87 +0.1
833,623 + LRK53_RS03525 0.87 -0.9
833,623 + LRK53_RS03525 0.87 -1.3
833,623 + LRK53_RS03525 0.87 +2.0
833,623 + LRK53_RS03525 0.87 -0.2
833,624 - LRK53_RS03525 0.87 -0.8
833,624 - LRK53_RS03525 0.87 -0.6
833,624 - LRK53_RS03525 0.87 -1.7
833,624 - LRK53_RS03525 0.87 -1.4
834,295 - LRK53_RS03530 0.85 -2.3
834,350 + -0.9
834,350 + -0.4
834,350 + -2.1
834,351 - +0.1
834,351 - +0.5
834,351 - -1.3
834,425 + +0.8
834,449 + -4.9
834,449 + +0.7
834,449 + +0.5
834,450 - -1.8
834,450 - -1.9
834,450 - +1.1
834,474 + -1.1
834,474 + +0.3
834,474 + -0.7
834,474 + +0.5
834,474 + -0.8
834,474 + -2.4
834,475 - +1.1
834,475 - +0.4
834,475 - -0.9
834,516 + -1.8
834,587 - -1.2
834,601 + +1.5
834,601 + +0.3
834,601 + -0.1
834,601 + -0.6
834,601 + -0.1
834,601 + +0.1
834,601 + +0.6
834,601 + +0.3
834,602 - -0.9
834,602 - -0.5
834,602 - -0.3
834,760 + LRK53_RS03535 0.27 -0.6
834,760 + LRK53_RS03535 0.27 -0.1
834,760 + LRK53_RS03535 0.27 -1.1
834,760 + LRK53_RS03535 0.27 -0.8
834,761 - LRK53_RS03535 0.27 +0.0
834,761 - LRK53_RS03535 0.27 -0.5
834,778 + LRK53_RS03535 0.29 +2.4
834,779 - LRK53_RS03535 0.29 -0.3
834,779 - LRK53_RS03535 0.29 -0.4
834,779 - LRK53_RS03535 0.29 -0.1
834,779 - LRK53_RS03535 0.29 -1.7
834,779 - LRK53_RS03535 0.29 -0.8
835,258 + LRK53_RS03535 0.80 -0.2
835,258 + LRK53_RS03535 0.80 -1.9
835,258 + LRK53_RS03535 0.80 -0.7
835,258 + LRK53_RS03535 0.80 -0.3
835,258 + LRK53_RS03535 0.80 +0.9
835,258 + LRK53_RS03535 0.80 -0.6
835,258 + LRK53_RS03535 0.80 -1.7
835,258 + LRK53_RS03535 0.80 +1.2
835,258 + LRK53_RS03535 0.80 +0.7
835,258 + LRK53_RS03535 0.80 -3.2
835,259 - LRK53_RS03535 0.80 -0.2
835,259 - LRK53_RS03535 0.80 -0.6
835,259 - LRK53_RS03535 0.80 +1.5
835,259 - LRK53_RS03535 0.80 +0.1
835,919 + LRK53_RS03540 0.41 -0.6
836,049 + LRK53_RS03540 0.62 -1.1
836,049 + LRK53_RS03540 0.62 -0.1
836,049 + LRK53_RS03540 0.62 +0.1
836,049 + LRK53_RS03540 0.62 -0.7
836,049 + LRK53_RS03540 0.62 +0.3
836,049 + LRK53_RS03540 0.62 -1.1
836,049 + LRK53_RS03540 0.62 +0.3
836,049 + LRK53_RS03540 0.62 -0.8
836,049 + LRK53_RS03540 0.62 -0.5
836,049 + LRK53_RS03540 0.62 -0.7
836,049 + LRK53_RS03540 0.62 -0.8
836,049 + LRK53_RS03540 0.62 +0.0
836,049 + LRK53_RS03540 0.62 -2.3
836,049 + LRK53_RS03540 0.62 +1.4
836,049 + LRK53_RS03540 0.62 +0.1
836,049 + LRK53_RS03540 0.62 -0.9
836,049 + LRK53_RS03540 0.62 +1.1
836,049 + LRK53_RS03540 0.62 +1.4
836,050 - LRK53_RS03540 0.62 -0.4
836,050 - LRK53_RS03540 0.62 -0.7
836,050 - LRK53_RS03540 0.62 +0.0
836,050 - LRK53_RS03540 0.62 +1.9
836,050 - LRK53_RS03540 0.62 +0.3
836,050 - LRK53_RS03540 0.62 +1.4
836,050 - LRK53_RS03540 0.62 -0.9
836,050 - LRK53_RS03540 0.62 +0.1
836,050 - LRK53_RS03540 0.62 -0.4
836,050 - LRK53_RS03540 0.62 -1.3
836,050 - LRK53_RS03540 0.62 -0.2
836,050 - LRK53_RS03540 0.62 +1.2
836,050 - LRK53_RS03540 0.62 -0.9
836,050 - LRK53_RS03540 0.62 +1.7
836,050 - LRK53_RS03540 0.62 -2.7
836,050 - LRK53_RS03540 0.62 -1.3
836,050 - LRK53_RS03540 0.62 +0.3
836,050 - LRK53_RS03540 0.62 -1.8
836,050 - LRK53_RS03540 0.62 +0.9
836,050 - LRK53_RS03540 0.62 -1.8
836,091 - LRK53_RS03540 0.69 +0.9
836,177 + LRK53_RS03540 0.83 -0.3
836,177 + LRK53_RS03540 0.83 -2.3
836,177 + LRK53_RS03540 0.83 -0.3
836,177 + LRK53_RS03540 0.83 -2.5
836,177 + LRK53_RS03540 0.83 -0.8
836,177 + LRK53_RS03540 0.83 -1.3
836,177 + LRK53_RS03540 0.83 -1.6
836,177 + LRK53_RS03540 0.83 -0.5
836,177 + LRK53_RS03540 0.83 +0.8
836,177 + LRK53_RS03540 0.83 -0.4
836,177 + LRK53_RS03540 0.83 -1.7
836,177 + LRK53_RS03540 0.83 -0.6
836,177 + LRK53_RS03540 0.83 +0.3
836,177 + LRK53_RS03540 0.83 -1.9
836,178 - LRK53_RS03540 0.83 -0.6
836,178 - LRK53_RS03540 0.83 -2.0
836,178 - LRK53_RS03540 0.83 +0.7
836,178 - LRK53_RS03540 0.83 -0.9
836,178 - LRK53_RS03540 0.83 -0.4
836,178 - LRK53_RS03540 0.83 -0.1
836,178 - LRK53_RS03540 0.83 -0.8
836,178 - LRK53_RS03540 0.83 -1.4
836,178 - LRK53_RS03540 0.83 -0.5
836,178 - LRK53_RS03540 0.83 +1.3
836,178 - LRK53_RS03540 0.83 -0.8
836,178 - LRK53_RS03540 0.83 -1.7
836,178 - LRK53_RS03540 0.83 -2.0
836,178 - LRK53_RS03540 0.83 -1.1
836,178 - LRK53_RS03540 0.83 -0.5
836,183 + LRK53_RS03540 0.84 +2.0
836,183 + LRK53_RS03540 0.84 -3.3
836,183 + LRK53_RS03540 0.84 -0.4
836,183 + LRK53_RS03540 0.84 +1.8
836,183 + LRK53_RS03540 0.84 -1.5
836,183 + LRK53_RS03540 0.84 +1.4
836,183 + LRK53_RS03540 0.84 -0.9
836,183 + LRK53_RS03540 0.84 +0.3
836,183 + LRK53_RS03540 0.84 +1.6
836,183 + LRK53_RS03540 0.84 -0.9
836,183 + LRK53_RS03540 0.84 +0.1
836,183 + LRK53_RS03540 0.84 -1.1
836,183 + LRK53_RS03540 0.84 +0.9
836,184 - LRK53_RS03540 0.84 -0.1
836,184 - LRK53_RS03540 0.84 +0.5
836,184 - LRK53_RS03540 0.84 -1.4
836,184 - LRK53_RS03540 0.84 -0.7
836,184 - LRK53_RS03540 0.84 -1.0
836,184 - LRK53_RS03540 0.84 -1.9
836,184 - LRK53_RS03540 0.84 -0.1
836,184 - LRK53_RS03540 0.84 -0.1
836,184 - LRK53_RS03540 0.84 -0.8
836,184 - LRK53_RS03540 0.84 -1.7
836,261 + +0.1
836,261 + -0.6
836,262 - +0.2
836,273 + -0.4
836,273 + +3.1
836,273 + +1.2
836,274 - -0.1
836,274 - -0.9
836,274 - -2.1
836,274 - +0.2
836,352 + LRK53_RS03545 0.24 -1.6
836,352 + LRK53_RS03545 0.24 -1.3
836,353 - LRK53_RS03545 0.24 +0.1
836,353 - LRK53_RS03545 0.24 +0.2

Or see this region's nucleotide sequence