Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03335

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03330 and LRK53_RS03335 are separated by 157 nucleotidesLRK53_RS03335 and LRK53_RS03340 are separated by 208 nucleotides LRK53_RS03330: LRK53_RS03330 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 785,797 to 786,621 _RS03330 LRK53_RS03335: LRK53_RS03335 - aldo/keto reductase, at 786,779 to 787,771 _RS03335 LRK53_RS03340: LRK53_RS03340 - glutathione S-transferase family protein, at 787,980 to 788,732 _RS03340 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 785.799 kb on - strandat 785.799 kb on - strandat 785.891 kb on + strand, within LRK53_RS03330at 785.892 kb on - strand, within LRK53_RS03330at 786.356 kb on + strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.578 kb on + strandat 786.578 kb on + strandat 786.578 kb on + strandat 786.578 kb on + strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.621 kb on + strandat 786.621 kb on + strandat 786.622 kb on - strandat 786.622 kb on - strandat 786.622 kb on - strandat 786.633 kb on + strandat 786.634 kb on - strandat 786.713 kb on - strandat 786.813 kb on + strandat 786.813 kb on + strandat 786.813 kb on + strandat 786.814 kb on - strandat 787.161 kb on + strand, within LRK53_RS03335at 787.161 kb on + strand, within LRK53_RS03335at 787.161 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.468 kb on - strand, within LRK53_RS03335at 787.468 kb on - strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.692 kb on + strandat 787.693 kb on - strandat 787.827 kb on + strandat 787.828 kb on - strandat 788.296 kb on + strand, within LRK53_RS03340at 788.296 kb on + strand, within LRK53_RS03340at 788.297 kb on - strand, within LRK53_RS03340at 788.297 kb on - strand, within LRK53_RS03340at 788.297 kb on - strand, within LRK53_RS03340at 788.437 kb on + strand, within LRK53_RS03340at 788.437 kb on + strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.438 kb on - strand, within LRK53_RS03340at 788.486 kb on - strand, within LRK53_RS03340at 788.518 kb on + strand, within LRK53_RS03340at 788.518 kb on + strand, within LRK53_RS03340at 788.519 kb on - strand, within LRK53_RS03340at 788.519 kb on - strand, within LRK53_RS03340at 788.644 kb on + strand, within LRK53_RS03340at 788.644 kb on + strand, within LRK53_RS03340at 788.644 kb on + strand, within LRK53_RS03340at 788.645 kb on - strand, within LRK53_RS03340at 788.645 kb on - strand, within LRK53_RS03340at 788.689 kb on + strandat 788.689 kb on + strandat 788.689 kb on + strandat 788.689 kb on + strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.701 kb on + strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strandat 788.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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785,799 - -1.7
785,799 - -0.1
785,891 + LRK53_RS03330 0.11 +1.5
785,892 - LRK53_RS03330 0.12 -1.3
786,356 + LRK53_RS03330 0.68 +0.1
786,357 - LRK53_RS03330 0.68 +0.5
786,357 - LRK53_RS03330 0.68 -0.6
786,357 - LRK53_RS03330 0.68 -0.2
786,357 - LRK53_RS03330 0.68 -1.3
786,578 + -3.2
786,578 + -0.5
786,578 + -2.0
786,578 + -0.5
786,579 - -0.1
786,579 - -1.6
786,579 - +0.1
786,579 - +0.8
786,579 - -0.7
786,579 - +0.8
786,621 + -2.7
786,621 + -1.1
786,622 - -0.2
786,622 - -0.3
786,622 - -1.3
786,633 + -1.9
786,634 - +0.7
786,713 - +0.3
786,813 + +0.6
786,813 + -1.1
786,813 + -0.6
786,814 - -0.6
787,161 + LRK53_RS03335 0.38 -0.7
787,161 + LRK53_RS03335 0.38 +1.7
787,161 + LRK53_RS03335 0.38 +2.3
787,404 + LRK53_RS03335 0.63 +0.1
787,404 + LRK53_RS03335 0.63 +0.5
787,404 + LRK53_RS03335 0.63 -1.0
787,404 + LRK53_RS03335 0.63 +0.2
787,404 + LRK53_RS03335 0.63 +1.5
787,404 + LRK53_RS03335 0.63 -0.8
787,404 + LRK53_RS03335 0.63 -0.5
787,405 - LRK53_RS03335 0.63 -1.2
787,405 - LRK53_RS03335 0.63 -0.7
787,405 - LRK53_RS03335 0.63 +0.7
787,405 - LRK53_RS03335 0.63 -1.6
787,407 + LRK53_RS03335 0.63 -1.7
787,407 + LRK53_RS03335 0.63 +2.1
787,407 + LRK53_RS03335 0.63 +1.7
787,407 + LRK53_RS03335 0.63 -0.8
787,407 + LRK53_RS03335 0.63 -1.3
787,407 + LRK53_RS03335 0.63 +0.2
787,407 + LRK53_RS03335 0.63 -0.8
787,407 + LRK53_RS03335 0.63 -0.1
787,407 + LRK53_RS03335 0.63 -1.6
787,407 + LRK53_RS03335 0.63 -1.0
787,407 + LRK53_RS03335 0.63 +0.1
787,407 + LRK53_RS03335 0.63 -0.6
787,407 + LRK53_RS03335 0.63 -0.0
787,407 + LRK53_RS03335 0.63 -0.0
787,407 + LRK53_RS03335 0.63 -1.2
787,408 - LRK53_RS03335 0.63 +2.7
787,408 - LRK53_RS03335 0.63 -1.9
787,408 - LRK53_RS03335 0.63 +0.9
787,408 - LRK53_RS03335 0.63 +1.5
787,408 - LRK53_RS03335 0.63 +2.1
787,408 - LRK53_RS03335 0.63 -1.2
787,408 - LRK53_RS03335 0.63 -1.1
787,408 - LRK53_RS03335 0.63 -0.1
787,408 - LRK53_RS03335 0.63 +0.3
787,408 - LRK53_RS03335 0.63 -1.2
787,408 - LRK53_RS03335 0.63 -0.8
787,408 - LRK53_RS03335 0.63 -1.3
787,408 - LRK53_RS03335 0.63 -2.4
787,408 - LRK53_RS03335 0.63 -1.7
787,408 - LRK53_RS03335 0.63 +0.0
787,408 - LRK53_RS03335 0.63 -0.8
787,408 - LRK53_RS03335 0.63 -1.1
787,467 + LRK53_RS03335 0.69 +0.8
787,467 + LRK53_RS03335 0.69 +0.4
787,467 + LRK53_RS03335 0.69 -1.6
787,467 + LRK53_RS03335 0.69 -0.8
787,468 - LRK53_RS03335 0.69 -1.4
787,468 - LRK53_RS03335 0.69 -3.0
787,605 + LRK53_RS03335 0.83 +0.1
787,605 + LRK53_RS03335 0.83 -1.4
787,605 + LRK53_RS03335 0.83 -1.6
787,605 + LRK53_RS03335 0.83 +1.5
787,605 + LRK53_RS03335 0.83 -2.9
787,605 + LRK53_RS03335 0.83 -0.1
787,605 + LRK53_RS03335 0.83 -1.1
787,605 + LRK53_RS03335 0.83 +1.7
787,605 + LRK53_RS03335 0.83 +0.8
787,605 + LRK53_RS03335 0.83 -0.4
787,605 + LRK53_RS03335 0.83 -0.4
787,605 + LRK53_RS03335 0.83 +0.3
787,606 - LRK53_RS03335 0.83 -0.2
787,606 - LRK53_RS03335 0.83 -1.0
787,606 - LRK53_RS03335 0.83 -1.2
787,606 - LRK53_RS03335 0.83 -0.6
787,606 - LRK53_RS03335 0.83 -0.1
787,606 - LRK53_RS03335 0.83 +0.8
787,606 - LRK53_RS03335 0.83 -0.4
787,606 - LRK53_RS03335 0.83 -0.8
787,606 - LRK53_RS03335 0.83 -0.6
787,606 - LRK53_RS03335 0.83 -0.6
787,606 - LRK53_RS03335 0.83 -1.6
787,606 - LRK53_RS03335 0.83 -1.1
787,606 - LRK53_RS03335 0.83 +0.7
787,606 - LRK53_RS03335 0.83 +0.1
787,606 - LRK53_RS03335 0.83 -1.1
787,692 + -1.0
787,693 - -0.5
787,827 + +0.6
787,828 - -0.2
788,296 + LRK53_RS03340 0.42 -0.3
788,296 + LRK53_RS03340 0.42 +1.8
788,297 - LRK53_RS03340 0.42 -0.8
788,297 - LRK53_RS03340 0.42 +0.1
788,297 - LRK53_RS03340 0.42 -0.8
788,437 + LRK53_RS03340 0.61 -1.9
788,437 + LRK53_RS03340 0.61 -0.8
788,438 - LRK53_RS03340 0.61 +0.3
788,438 - LRK53_RS03340 0.61 -2.4
788,438 - LRK53_RS03340 0.61 -1.4
788,438 - LRK53_RS03340 0.61 +0.4
788,438 - LRK53_RS03340 0.61 +0.1
788,438 - LRK53_RS03340 0.61 +0.3
788,438 - LRK53_RS03340 0.61 +0.5
788,438 - LRK53_RS03340 0.61 +2.1
788,486 - LRK53_RS03340 0.67 -0.0
788,518 + LRK53_RS03340 0.71 -1.5
788,518 + LRK53_RS03340 0.71 -1.3
788,519 - LRK53_RS03340 0.72 -1.3
788,519 - LRK53_RS03340 0.72 -0.1
788,644 + LRK53_RS03340 0.88 +0.3
788,644 + LRK53_RS03340 0.88 +0.6
788,644 + LRK53_RS03340 0.88 +0.3
788,645 - LRK53_RS03340 0.88 -0.1
788,645 - LRK53_RS03340 0.88 +0.5
788,689 + -0.2
788,689 + -1.2
788,689 + -0.7
788,689 + -0.3
788,690 - -0.7
788,690 - -2.5
788,690 - -0.4
788,690 - +0.3
788,690 - -0.8
788,690 - -1.3
788,690 - +0.3
788,701 + -0.2
788,701 + +1.2
788,701 + -0.2
788,701 + -0.4
788,701 + -1.1
788,701 + -2.9
788,701 + +0.3
788,701 + -0.9
788,701 + -1.3
788,701 + -1.5
788,701 + -1.8
788,701 + -1.0
788,702 - -0.2
788,702 - -0.9
788,702 - +0.5
788,702 - +0.1
788,702 - -0.7
788,702 - -0.1
788,702 - -2.1
788,702 - +0.1
788,702 - -0.2
788,702 - -0.8
788,702 - -0.4
788,702 - -0.5

Or see this region's nucleotide sequence