Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03220 and LRK53_RS03225 are separated by 131 nucleotides LRK53_RS03225 and LRK53_RS03230 are separated by 272 nucleotides
LRK53_RS03220: LRK53_RS03220 - sulfatase-like hydrolase/transferase, at 754,904 to 756,616
_RS03220
LRK53_RS03225: LRK53_RS03225 - hypothetical protein, at 756,748 to 756,978
_RS03225
LRK53_RS03230: LRK53_RS03230 - alkaline phosphatase, at 757,251 to 759,008
_RS03230
Position (kb) 756
757 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.813 kb on + strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.814 kb on - strand, within LRK53_RS03220 at 755.822 kb on + strand, within LRK53_RS03220 at 755.822 kb on + strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.823 kb on - strand, within LRK53_RS03220 at 755.897 kb on + strand, within LRK53_RS03220 at 755.897 kb on + strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.898 kb on - strand, within LRK53_RS03220 at 755.936 kb on + strand, within LRK53_RS03220 at 755.936 kb on + strand, within LRK53_RS03220 at 755.946 kb on - strand, within LRK53_RS03220 at 755.946 kb on - strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.963 kb on + strand, within LRK53_RS03220 at 755.964 kb on - strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.038 kb on + strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.039 kb on - strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.197 kb on + strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.198 kb on - strand, within LRK53_RS03220 at 756.372 kb on - strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.380 kb on + strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.381 kb on - strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.383 kb on + strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.384 kb on - strand, within LRK53_RS03220 at 756.426 kb on - strand, within LRK53_RS03220 at 756.465 kb on + strand at 756.465 kb on + strand at 756.465 kb on + strand at 756.465 kb on + strand at 756.466 kb on - strand at 756.466 kb on - strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.494 kb on + strand at 756.495 kb on - strand at 756.495 kb on - strand at 756.539 kb on + strand at 756.539 kb on + strand at 756.540 kb on - strand at 756.540 kb on - strand at 756.575 kb on + strand at 756.576 kb on - strand at 756.576 kb on - strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.608 kb on + strand at 756.609 kb on - strand at 756.609 kb on - strand at 756.609 kb on - strand at 756.615 kb on - strand at 756.615 kb on - strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.747 kb on + strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.748 kb on - strand at 756.938 kb on - strand, within LRK53_RS03225 at 756.949 kb on + strand, within LRK53_RS03225 at 756.949 kb on + strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.950 kb on - strand, within LRK53_RS03225 at 756.989 kb on - strand at 757.004 kb on - strand at 757.066 kb on + strand at 757.066 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.075 kb on + strand at 757.197 kb on - strand at 757.197 kb on - strand at 757.250 kb on + strand at 757.250 kb on + strand at 757.250 kb on + strand at 757.251 kb on - strand at 757.578 kb on + strand, within LRK53_RS03230 at 757.578 kb on + strand, within LRK53_RS03230 at 757.626 kb on + strand, within LRK53_RS03230 at 757.627 kb on - strand, within LRK53_RS03230 at 757.704 kb on + strand, within LRK53_RS03230 at 757.704 kb on + strand, within LRK53_RS03230 at 757.857 kb on + strand, within LRK53_RS03230 at 757.857 kb on + strand, within LRK53_RS03230 at 757.857 kb on + strand, within LRK53_RS03230 at 757.858 kb on - strand, within LRK53_RS03230 at 757.858 kb on - strand, within LRK53_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 755,813 + LRK53_RS03220 0.53 -1.2 755,813 + LRK53_RS03220 0.53 -1.6 755,813 + LRK53_RS03220 0.53 -0.1 755,813 + LRK53_RS03220 0.53 -3.2 755,813 + LRK53_RS03220 0.53 -3.2 755,813 + LRK53_RS03220 0.53 +0.1 755,813 + LRK53_RS03220 0.53 -0.6 755,813 + LRK53_RS03220 0.53 -1.9 755,814 - LRK53_RS03220 0.53 -0.8 755,814 - LRK53_RS03220 0.53 -2.1 755,814 - LRK53_RS03220 0.53 +0.0 755,814 - LRK53_RS03220 0.53 -3.0 755,814 - LRK53_RS03220 0.53 -1.2 755,814 - LRK53_RS03220 0.53 -0.6 755,814 - LRK53_RS03220 0.53 -2.3 755,814 - LRK53_RS03220 0.53 -0.8 755,814 - LRK53_RS03220 0.53 +0.5 755,814 - LRK53_RS03220 0.53 -0.5 755,814 - LRK53_RS03220 0.53 -0.7 755,814 - LRK53_RS03220 0.53 -1.4 755,822 + LRK53_RS03220 0.54 -0.6 755,822 + LRK53_RS03220 0.54 +0.3 755,823 - LRK53_RS03220 0.54 +0.5 755,823 - LRK53_RS03220 0.54 -1.3 755,823 - LRK53_RS03220 0.54 -0.2 755,823 - LRK53_RS03220 0.54 -1.2 755,897 + LRK53_RS03220 0.58 -1.4 755,897 + LRK53_RS03220 0.58 -0.4 755,898 - LRK53_RS03220 0.58 +0.8 755,898 - LRK53_RS03220 0.58 +0.8 755,898 - LRK53_RS03220 0.58 -1.2 755,936 + LRK53_RS03220 0.60 -0.2 755,936 + LRK53_RS03220 0.60 +0.1 755,946 - LRK53_RS03220 0.61 +0.7 755,946 - LRK53_RS03220 0.61 -0.2 755,963 + LRK53_RS03220 0.62 +0.2 755,963 + LRK53_RS03220 0.62 -0.4 755,963 + LRK53_RS03220 0.62 +0.8 755,963 + LRK53_RS03220 0.62 +0.3 755,964 - LRK53_RS03220 0.62 -2.1 756,038 + LRK53_RS03220 0.66 -1.7 756,038 + LRK53_RS03220 0.66 +0.1 756,038 + LRK53_RS03220 0.66 -0.1 756,038 + LRK53_RS03220 0.66 -1.3 756,038 + LRK53_RS03220 0.66 +0.1 756,039 - LRK53_RS03220 0.66 -0.1 756,039 - LRK53_RS03220 0.66 +0.8 756,039 - LRK53_RS03220 0.66 +0.9 756,039 - LRK53_RS03220 0.66 -0.7 756,197 + LRK53_RS03220 0.75 -1.7 756,197 + LRK53_RS03220 0.75 +0.1 756,197 + LRK53_RS03220 0.75 -1.1 756,197 + LRK53_RS03220 0.75 +0.1 756,197 + LRK53_RS03220 0.75 +1.1 756,197 + LRK53_RS03220 0.75 -0.1 756,197 + LRK53_RS03220 0.75 -1.2 756,197 + LRK53_RS03220 0.75 +0.7 756,197 + LRK53_RS03220 0.75 -1.7 756,197 + LRK53_RS03220 0.75 -0.1 756,197 + LRK53_RS03220 0.75 -1.9 756,198 - LRK53_RS03220 0.76 +0.1 756,198 - LRK53_RS03220 0.76 +0.8 756,198 - LRK53_RS03220 0.76 -3.8 756,198 - LRK53_RS03220 0.76 -1.0 756,198 - LRK53_RS03220 0.76 -1.2 756,198 - LRK53_RS03220 0.76 -1.4 756,198 - LRK53_RS03220 0.76 -1.7 756,198 - LRK53_RS03220 0.76 -1.4 756,198 - LRK53_RS03220 0.76 +0.1 756,198 - LRK53_RS03220 0.76 -1.2 756,198 - LRK53_RS03220 0.76 -0.8 756,198 - LRK53_RS03220 0.76 +0.3 756,198 - LRK53_RS03220 0.76 -1.2 756,198 - LRK53_RS03220 0.76 -0.5 756,198 - LRK53_RS03220 0.76 -2.1 756,198 - LRK53_RS03220 0.76 +1.3 756,198 - LRK53_RS03220 0.76 -0.7 756,198 - LRK53_RS03220 0.76 -1.3 756,198 - LRK53_RS03220 0.76 -0.3 756,372 - LRK53_RS03220 0.86 -1.0 756,380 + LRK53_RS03220 0.86 -1.3 756,380 + LRK53_RS03220 0.86 +1.2 756,380 + LRK53_RS03220 0.86 -0.4 756,380 + LRK53_RS03220 0.86 -1.2 756,380 + LRK53_RS03220 0.86 -2.0 756,380 + LRK53_RS03220 0.86 -0.3 756,380 + LRK53_RS03220 0.86 +0.4 756,380 + LRK53_RS03220 0.86 -2.0 756,380 + LRK53_RS03220 0.86 -0.7 756,380 + LRK53_RS03220 0.86 -0.7 756,380 + LRK53_RS03220 0.86 -2.9 756,381 - LRK53_RS03220 0.86 +0.1 756,381 - LRK53_RS03220 0.86 -1.1 756,381 - LRK53_RS03220 0.86 -0.1 756,381 - LRK53_RS03220 0.86 -0.7 756,381 - LRK53_RS03220 0.86 -1.1 756,381 - LRK53_RS03220 0.86 -0.1 756,381 - LRK53_RS03220 0.86 -0.8 756,381 - LRK53_RS03220 0.86 -1.2 756,381 - LRK53_RS03220 0.86 -1.8 756,383 + LRK53_RS03220 0.86 -1.0 756,383 + LRK53_RS03220 0.86 -0.5 756,383 + LRK53_RS03220 0.86 +0.8 756,383 + LRK53_RS03220 0.86 -0.1 756,383 + LRK53_RS03220 0.86 -0.6 756,383 + LRK53_RS03220 0.86 -0.5 756,383 + LRK53_RS03220 0.86 +0.6 756,383 + LRK53_RS03220 0.86 -1.8 756,383 + LRK53_RS03220 0.86 +2.7 756,383 + LRK53_RS03220 0.86 +0.8 756,383 + LRK53_RS03220 0.86 +0.3 756,383 + LRK53_RS03220 0.86 +0.1 756,383 + LRK53_RS03220 0.86 -2.1 756,383 + LRK53_RS03220 0.86 +1.1 756,383 + LRK53_RS03220 0.86 -0.4 756,383 + LRK53_RS03220 0.86 -0.9 756,383 + LRK53_RS03220 0.86 +0.4 756,383 + LRK53_RS03220 0.86 -2.4 756,384 - LRK53_RS03220 0.86 -2.6 756,384 - LRK53_RS03220 0.86 -0.1 756,384 - LRK53_RS03220 0.86 -1.6 756,384 - LRK53_RS03220 0.86 +1.4 756,384 - LRK53_RS03220 0.86 +0.1 756,384 - LRK53_RS03220 0.86 -2.0 756,384 - LRK53_RS03220 0.86 +1.3 756,384 - LRK53_RS03220 0.86 -0.8 756,384 - LRK53_RS03220 0.86 +0.1 756,384 - LRK53_RS03220 0.86 -1.8 756,384 - LRK53_RS03220 0.86 -0.4 756,384 - LRK53_RS03220 0.86 -2.0 756,384 - LRK53_RS03220 0.86 -0.0 756,384 - LRK53_RS03220 0.86 -1.0 756,384 - LRK53_RS03220 0.86 +2.3 756,384 - LRK53_RS03220 0.86 -1.0 756,384 - LRK53_RS03220 0.86 -1.0 756,384 - LRK53_RS03220 0.86 +0.3 756,426 - LRK53_RS03220 0.89 -0.3 756,465 + +2.1 756,465 + +1.3 756,465 + -1.0 756,465 + -1.2 756,466 - -0.7 756,466 - -3.5 756,494 + +0.3 756,494 + -0.5 756,494 + +1.0 756,494 + -2.3 756,495 - +0.1 756,495 - +0.5 756,539 + -0.1 756,539 + -0.6 756,540 - +0.8 756,540 - -0.5 756,575 + -1.4 756,576 - +0.7 756,576 - -0.3 756,608 + -0.9 756,608 + -1.6 756,608 + -1.0 756,608 + +1.2 756,609 - -1.6 756,609 - -0.7 756,609 - -0.4 756,615 - -1.1 756,615 - -2.0 756,747 + -0.5 756,747 + +2.8 756,747 + -0.1 756,747 + +2.2 756,747 + -1.2 756,747 + +0.6 756,747 + -0.4 756,747 + +2.5 756,747 + -0.8 756,747 + +0.3 756,747 + -2.3 756,747 + +2.6 756,747 + -1.9 756,747 + -1.0 756,747 + -1.6 756,747 + +0.2 756,747 + -2.5 756,747 + +0.1 756,747 + -0.9 756,747 + -0.2 756,748 - +0.5 756,748 - -1.6 756,748 - +0.1 756,748 - -0.6 756,748 - +1.5 756,748 - -0.1 756,748 - -0.6 756,748 - -0.4 756,748 - +0.1 756,748 - -1.2 756,748 - -1.1 756,748 - -0.8 756,748 - +1.9 756,748 - +1.6 756,748 - +0.7 756,748 - +1.1 756,748 - +0.5 756,748 - -0.7 756,748 - -1.5 756,748 - +1.3 756,748 - -0.9 756,748 - -0.6 756,938 - LRK53_RS03225 0.82 -1.0 756,949 + LRK53_RS03225 0.87 -0.7 756,949 + LRK53_RS03225 0.87 -2.2 756,950 - LRK53_RS03225 0.87 -1.3 756,950 - LRK53_RS03225 0.87 -1.4 756,950 - LRK53_RS03225 0.87 +0.1 756,950 - LRK53_RS03225 0.87 -2.4 756,950 - LRK53_RS03225 0.87 -1.8 756,950 - LRK53_RS03225 0.87 -0.7 756,989 - +0.3 757,004 - +0.1 757,066 + -0.2 757,066 + +0.8 757,075 + -0.4 757,075 + -0.2 757,075 + -0.4 757,075 + -1.2 757,075 + +0.8 757,075 + -0.5 757,075 + +0.1 757,075 + +0.3 757,075 + -0.7 757,075 + -1.2 757,075 + -0.2 757,075 + -0.4 757,075 + -0.6 757,075 + -0.2 757,075 + -1.0 757,075 + -1.8 757,075 + -1.1 757,197 - +1.3 757,197 - -1.0 757,250 + -0.2 757,250 + +1.3 757,250 + -0.0 757,251 - +0.1 757,578 + LRK53_RS03230 0.19 -0.1 757,578 + LRK53_RS03230 0.19 +0.5 757,626 + LRK53_RS03230 0.21 -1.6 757,627 - LRK53_RS03230 0.21 -0.1 757,704 + LRK53_RS03230 0.26 -1.2 757,704 + LRK53_RS03230 0.26 -0.4 757,857 + LRK53_RS03230 0.34 +0.5 757,857 + LRK53_RS03230 0.34 -1.9 757,857 + LRK53_RS03230 0.34 -0.5 757,858 - LRK53_RS03230 0.35 -0.6 757,858 - LRK53_RS03230 0.35 +0.8
Or see this region's nucleotide sequence