Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03070

Experiment: biofilm; Day2; NLDM;

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03065 and LRK53_RS03070 are separated by 244 nucleotidesLRK53_RS03070 and LRK53_RS03075 are separated by 227 nucleotides LRK53_RS03065: LRK53_RS03065 - 4-hydroxybenzoate octaprenyltransferase, at 714,673 to 715,602 _RS03065 LRK53_RS03070: LRK53_RS03070 - GGDEF domain-containing protein, at 715,847 to 716,983 _RS03070 LRK53_RS03075: LRK53_RS03075 - threonine ammonia-lyase, biosynthetic, at 717,211 to 718,761 _RS03075 Position (kb) 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.509 kb on - strand, within LRK53_RS03065at 715.711 kb on - strandat 715.711 kb on - strandat 715.771 kb on - strandat 715.856 kb on + strandat 715.857 kb on - strandat 716.147 kb on + strand, within LRK53_RS03070at 716.148 kb on - strand, within LRK53_RS03070at 716.148 kb on - strand, within LRK53_RS03070at 716.366 kb on + strand, within LRK53_RS03070at 716.366 kb on + strand, within LRK53_RS03070at 716.367 kb on - strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.588 kb on - strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.838 kb on - strand, within LRK53_RS03070at 716.876 kb on + strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.879 kb on + strandat 716.879 kb on + strandat 716.880 kb on - strandat 716.880 kb on - strandat 716.995 kb on + strandat 716.996 kb on - strandat 717.452 kb on + strand, within LRK53_RS03075at 717.453 kb on - strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.857 kb on + strand, within LRK53_RS03075at 717.857 kb on + strand, within LRK53_RS03075at 717.858 kb on - strand, within LRK53_RS03075at 717.858 kb on - strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
remove
715,509 - LRK53_RS03065 0.90 -2.6
715,711 - +0.3
715,711 - +0.5
715,771 - +0.3
715,856 + +0.1
715,857 - -2.5
716,147 + LRK53_RS03070 0.26 -2.0
716,148 - LRK53_RS03070 0.26 -1.8
716,148 - LRK53_RS03070 0.26 -1.3
716,366 + LRK53_RS03070 0.46 -0.2
716,366 + LRK53_RS03070 0.46 -3.1
716,367 - LRK53_RS03070 0.46 -0.8
716,375 + LRK53_RS03070 0.46 -2.8
716,375 + LRK53_RS03070 0.46 -1.2
716,375 + LRK53_RS03070 0.46 -1.0
716,375 + LRK53_RS03070 0.46 -0.6
716,375 + LRK53_RS03070 0.46 +0.3
716,375 + LRK53_RS03070 0.46 -0.2
716,375 + LRK53_RS03070 0.46 -0.3
716,375 + LRK53_RS03070 0.46 +0.3
716,375 + LRK53_RS03070 0.46 -1.6
716,375 + LRK53_RS03070 0.46 -1.2
716,375 + LRK53_RS03070 0.46 -1.1
716,376 - LRK53_RS03070 0.47 -1.8
716,376 - LRK53_RS03070 0.47 +0.1
716,376 - LRK53_RS03070 0.47 -0.2
716,376 - LRK53_RS03070 0.47 -0.5
716,376 - LRK53_RS03070 0.47 +0.5
716,423 + LRK53_RS03070 0.51 -0.5
716,423 + LRK53_RS03070 0.51 -2.2
716,423 + LRK53_RS03070 0.51 +2.8
716,424 - LRK53_RS03070 0.51 -0.1
716,424 - LRK53_RS03070 0.51 +0.2
716,587 + LRK53_RS03070 0.65 +2.0
716,587 + LRK53_RS03070 0.65 -0.3
716,587 + LRK53_RS03070 0.65 +1.7
716,587 + LRK53_RS03070 0.65 -1.9
716,588 - LRK53_RS03070 0.65 -1.2
716,591 + LRK53_RS03070 0.65 +0.5
716,591 + LRK53_RS03070 0.65 +2.1
716,591 + LRK53_RS03070 0.65 -1.3
716,591 + LRK53_RS03070 0.65 -0.4
716,591 + LRK53_RS03070 0.65 -1.6
716,591 + LRK53_RS03070 0.65 -1.1
716,592 - LRK53_RS03070 0.66 +0.5
716,592 - LRK53_RS03070 0.66 -0.4
716,592 - LRK53_RS03070 0.66 -1.0
716,592 - LRK53_RS03070 0.66 -2.3
716,592 - LRK53_RS03070 0.66 -0.8
716,603 + LRK53_RS03070 0.66 -1.1
716,603 + LRK53_RS03070 0.66 -0.8
716,603 + LRK53_RS03070 0.66 -1.4
716,603 + LRK53_RS03070 0.66 +0.4
716,603 + LRK53_RS03070 0.66 +0.1
716,603 + LRK53_RS03070 0.66 +0.6
716,604 - LRK53_RS03070 0.67 -0.1
716,604 - LRK53_RS03070 0.67 -2.0
716,604 - LRK53_RS03070 0.67 -2.7
716,604 - LRK53_RS03070 0.67 -0.2
716,604 - LRK53_RS03070 0.67 -3.3
716,604 - LRK53_RS03070 0.67 -1.2
716,838 - LRK53_RS03070 0.87 -0.4
716,876 + +0.3
716,877 - +0.5
716,877 - -0.5
716,877 - +0.1
716,877 - -1.0
716,877 - -0.8
716,877 - -2.0
716,877 - -2.2
716,879 + +0.0
716,879 + +0.5
716,880 - -0.2
716,880 - -0.1
716,995 + -2.1
716,996 - -1.6
717,452 + LRK53_RS03075 0.16 -1.4
717,453 - LRK53_RS03075 0.16 +0.3
717,650 + LRK53_RS03075 0.28 -0.5
717,650 + LRK53_RS03075 0.28 +0.1
717,650 + LRK53_RS03075 0.28 -2.0
717,650 + LRK53_RS03075 0.28 -0.1
717,650 + LRK53_RS03075 0.28 +2.0
717,650 + LRK53_RS03075 0.28 +2.4
717,651 - LRK53_RS03075 0.28 -2.6
717,651 - LRK53_RS03075 0.28 -0.4
717,651 - LRK53_RS03075 0.28 -0.9
717,651 - LRK53_RS03075 0.28 -0.4
717,857 + LRK53_RS03075 0.42 -0.3
717,857 + LRK53_RS03075 0.42 -0.2
717,858 - LRK53_RS03075 0.42 -0.9
717,858 - LRK53_RS03075 0.42 -3.0
717,980 + LRK53_RS03075 0.50 -0.5
717,980 + LRK53_RS03075 0.50 -2.7
717,980 + LRK53_RS03075 0.50 +0.0
717,980 + LRK53_RS03075 0.50 -1.1
717,980 + LRK53_RS03075 0.50 +1.9
717,981 - LRK53_RS03075 0.50 -1.7
717,981 - LRK53_RS03075 0.50 -2.2
717,981 - LRK53_RS03075 0.50 -3.2
717,981 - LRK53_RS03075 0.50 +0.5
717,981 - LRK53_RS03075 0.50 -1.5

Or see this region's nucleotide sequence