Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00450

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00440 and LRK53_RS00445 overlap by 4 nucleotidesLRK53_RS00445 and LRK53_RS00450 are separated by 78 nucleotidesLRK53_RS00450 and LRK53_RS00455 are separated by 377 nucleotidesLRK53_RS00455 and LRK53_RS00460 overlap by 16 nucleotides LRK53_RS00440: LRK53_RS00440 - hypothetical protein, at 98,739 to 99,371 _RS00440 LRK53_RS00445: LRK53_RS00445 - sigma-70 family RNA polymerase sigma factor, at 99,368 to 99,952 _RS00445 LRK53_RS00450: LRK53_RS00450 - hypothetical protein, at 100,031 to 100,828 _RS00450 LRK53_RS00455: LRK53_RS00455 - FdtA/QdtA family cupin domain-containing protein, at 101,206 to 101,643 _RS00455 LRK53_RS00460: LRK53_RS00460 - acetyltransferase, at 101,628 to 102,293 _RS00460 Position (kb) 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 99.669 kb on + strand, within LRK53_RS00445at 99.670 kb on - strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.861 kb on + strand, within LRK53_RS00445at 100.203 kb on + strand, within LRK53_RS00450at 100.221 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.261 kb on - strand, within LRK53_RS00450at 100.416 kb on + strand, within LRK53_RS00450at 100.417 kb on - strand, within LRK53_RS00450at 100.417 kb on - strand, within LRK53_RS00450at 100.482 kb on + strand, within LRK53_RS00450at 100.485 kb on + strand, within LRK53_RS00450at 100.485 kb on + strand, within LRK53_RS00450at 100.485 kb on + strand, within LRK53_RS00450at 100.485 kb on + strand, within LRK53_RS00450at 100.485 kb on + strand, within LRK53_RS00450at 100.486 kb on - strand, within LRK53_RS00450at 100.486 kb on - strand, within LRK53_RS00450at 100.577 kb on + strand, within LRK53_RS00450at 100.810 kb on - strandat 100.810 kb on - strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.950 kb on + strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 100.951 kb on - strandat 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.308 kb on + strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.309 kb on - strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.311 kb on + strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.312 kb on - strand, within LRK53_RS00455at 101.459 kb on - strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.497 kb on + strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.498 kb on - strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.545 kb on + strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.546 kb on - strand, within LRK53_RS00455at 101.560 kb on + strand, within LRK53_RS00455at 101.560 kb on + strand, within LRK53_RS00455at 101.560 kb on + strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.561 kb on - strand, within LRK53_RS00455at 101.608 kb on + strandat 101.608 kb on + strandat 101.609 kb on - strandat 101.609 kb on - strandat 101.641 kb on + strandat 101.641 kb on + strandat 101.642 kb on - strandat 101.642 kb on - strandat 101.642 kb on - strandat 101.685 kb on + strandat 101.685 kb on + strandat 101.686 kb on - strandat 101.739 kb on + strand, within LRK53_RS00460at 101.739 kb on + strand, within LRK53_RS00460at 101.739 kb on + strand, within LRK53_RS00460at 101.740 kb on - strand, within LRK53_RS00460at 101.740 kb on - strand, within LRK53_RS00460at 101.740 kb on - strand, within LRK53_RS00460at 101.740 kb on - strand, within LRK53_RS00460at 101.781 kb on + strand, within LRK53_RS00460at 101.782 kb on - strand, within LRK53_RS00460at 101.782 kb on - strand, within LRK53_RS00460at 101.802 kb on + strand, within LRK53_RS00460

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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99,669 + LRK53_RS00445 0.51 -1.4
99,670 - LRK53_RS00445 0.52 -0.2
99,852 + LRK53_RS00445 0.83 -0.6
99,852 + LRK53_RS00445 0.83 +0.1
99,852 + LRK53_RS00445 0.83 -0.4
99,852 + LRK53_RS00445 0.83 -0.6
99,852 + LRK53_RS00445 0.83 -0.1
99,852 + LRK53_RS00445 0.83 +0.5
99,853 - LRK53_RS00445 0.83 -0.2
99,853 - LRK53_RS00445 0.83 +2.1
99,853 - LRK53_RS00445 0.83 -1.7
99,853 - LRK53_RS00445 0.83 -0.6
99,853 - LRK53_RS00445 0.83 -0.6
99,861 + LRK53_RS00445 0.84 +1.0
100,203 + LRK53_RS00450 0.22 -0.2
100,221 + LRK53_RS00450 0.24 -0.2
100,251 + LRK53_RS00450 0.28 -0.0
100,251 + LRK53_RS00450 0.28 -0.1
100,251 + LRK53_RS00450 0.28 -1.9
100,251 + LRK53_RS00450 0.28 -1.4
100,252 - LRK53_RS00450 0.28 -1.4
100,252 - LRK53_RS00450 0.28 -0.2
100,252 - LRK53_RS00450 0.28 +1.1
100,252 - LRK53_RS00450 0.28 +0.8
100,252 - LRK53_RS00450 0.28 +0.5
100,252 - LRK53_RS00450 0.28 -1.3
100,255 + LRK53_RS00450 0.28 +0.3
100,255 + LRK53_RS00450 0.28 -0.0
100,255 + LRK53_RS00450 0.28 -0.8
100,256 - LRK53_RS00450 0.28 +0.1
100,256 - LRK53_RS00450 0.28 -0.0
100,256 - LRK53_RS00450 0.28 +1.5
100,256 - LRK53_RS00450 0.28 -0.0
100,256 - LRK53_RS00450 0.28 -0.2
100,256 - LRK53_RS00450 0.28 -0.8
100,256 - LRK53_RS00450 0.28 +0.7
100,260 + LRK53_RS00450 0.29 +1.3
100,260 + LRK53_RS00450 0.29 -2.0
100,260 + LRK53_RS00450 0.29 +1.4
100,261 - LRK53_RS00450 0.29 +0.4
100,416 + LRK53_RS00450 0.48 -0.2
100,417 - LRK53_RS00450 0.48 -2.2
100,417 - LRK53_RS00450 0.48 -0.9
100,482 + LRK53_RS00450 0.57 -0.2
100,485 + LRK53_RS00450 0.57 -0.9
100,485 + LRK53_RS00450 0.57 +3.1
100,485 + LRK53_RS00450 0.57 -1.4
100,485 + LRK53_RS00450 0.57 +1.5
100,485 + LRK53_RS00450 0.57 -0.7
100,486 - LRK53_RS00450 0.57 +1.0
100,486 - LRK53_RS00450 0.57 -1.9
100,577 + LRK53_RS00450 0.68 +0.7
100,810 - -0.5
100,810 - -1.0
100,950 + -1.3
100,950 + -0.5
100,950 + -0.6
100,950 + +0.6
100,950 + +0.7
100,950 + +0.7
100,951 - -0.6
100,951 - -1.2
100,951 - -1.8
100,951 - -1.3
100,951 - +0.8
100,951 - -0.8
100,951 - -0.4
101,308 + LRK53_RS00455 0.23 -0.1
101,308 + LRK53_RS00455 0.23 -0.0
101,308 + LRK53_RS00455 0.23 -1.0
101,308 + LRK53_RS00455 0.23 -3.2
101,309 - LRK53_RS00455 0.24 -2.0
101,309 - LRK53_RS00455 0.24 -0.8
101,309 - LRK53_RS00455 0.24 -0.0
101,309 - LRK53_RS00455 0.24 +0.5
101,309 - LRK53_RS00455 0.24 -1.4
101,309 - LRK53_RS00455 0.24 -0.8
101,309 - LRK53_RS00455 0.24 +0.1
101,309 - LRK53_RS00455 0.24 -0.7
101,309 - LRK53_RS00455 0.24 -1.3
101,309 - LRK53_RS00455 0.24 -2.0
101,309 - LRK53_RS00455 0.24 -2.1
101,309 - LRK53_RS00455 0.24 -1.3
101,311 + LRK53_RS00455 0.24 -1.2
101,311 + LRK53_RS00455 0.24 +0.1
101,311 + LRK53_RS00455 0.24 -3.6
101,312 - LRK53_RS00455 0.24 -1.0
101,312 - LRK53_RS00455 0.24 +2.4
101,312 - LRK53_RS00455 0.24 +0.1
101,312 - LRK53_RS00455 0.24 -0.5
101,312 - LRK53_RS00455 0.24 +0.1
101,312 - LRK53_RS00455 0.24 -0.5
101,312 - LRK53_RS00455 0.24 +0.3
101,459 - LRK53_RS00455 0.58 +0.5
101,497 + LRK53_RS00455 0.66 -0.8
101,497 + LRK53_RS00455 0.66 -1.0
101,497 + LRK53_RS00455 0.66 +3.7
101,497 + LRK53_RS00455 0.66 -0.3
101,497 + LRK53_RS00455 0.66 +0.6
101,497 + LRK53_RS00455 0.66 -1.1
101,497 + LRK53_RS00455 0.66 -1.1
101,497 + LRK53_RS00455 0.66 -1.8
101,497 + LRK53_RS00455 0.66 +0.2
101,498 - LRK53_RS00455 0.67 -1.3
101,498 - LRK53_RS00455 0.67 -0.0
101,498 - LRK53_RS00455 0.67 -0.3
101,498 - LRK53_RS00455 0.67 -1.6
101,498 - LRK53_RS00455 0.67 -0.7
101,498 - LRK53_RS00455 0.67 -0.9
101,545 + LRK53_RS00455 0.77 -0.9
101,545 + LRK53_RS00455 0.77 +2.1
101,545 + LRK53_RS00455 0.77 -1.0
101,545 + LRK53_RS00455 0.77 -0.4
101,545 + LRK53_RS00455 0.77 -2.9
101,545 + LRK53_RS00455 0.77 -1.3
101,545 + LRK53_RS00455 0.77 -0.2
101,545 + LRK53_RS00455 0.77 +1.1
101,545 + LRK53_RS00455 0.77 +0.7
101,545 + LRK53_RS00455 0.77 -0.2
101,545 + LRK53_RS00455 0.77 -0.0
101,546 - LRK53_RS00455 0.78 -1.1
101,546 - LRK53_RS00455 0.78 -1.1
101,546 - LRK53_RS00455 0.78 -0.3
101,546 - LRK53_RS00455 0.78 +0.1
101,546 - LRK53_RS00455 0.78 -0.4
101,546 - LRK53_RS00455 0.78 +0.3
101,546 - LRK53_RS00455 0.78 -0.6
101,546 - LRK53_RS00455 0.78 -1.0
101,546 - LRK53_RS00455 0.78 +0.9
101,546 - LRK53_RS00455 0.78 -1.1
101,560 + LRK53_RS00455 0.81 -0.2
101,560 + LRK53_RS00455 0.81 -0.1
101,560 + LRK53_RS00455 0.81 -0.0
101,561 - LRK53_RS00455 0.81 +0.5
101,561 - LRK53_RS00455 0.81 -2.0
101,561 - LRK53_RS00455 0.81 +0.2
101,608 + -1.2
101,608 + -0.1
101,609 - +1.3
101,609 - -1.4
101,641 + -0.3
101,641 + -0.7
101,642 - +0.7
101,642 - +0.2
101,642 - -1.3
101,685 + -1.8
101,685 + -2.2
101,686 - +0.3
101,739 + LRK53_RS00460 0.17 -0.9
101,739 + LRK53_RS00460 0.17 -1.2
101,739 + LRK53_RS00460 0.17 -2.3
101,740 - LRK53_RS00460 0.17 -2.8
101,740 - LRK53_RS00460 0.17 -1.3
101,740 - LRK53_RS00460 0.17 -1.6
101,740 - LRK53_RS00460 0.17 +1.8
101,781 + LRK53_RS00460 0.23 -0.5
101,782 - LRK53_RS00460 0.23 -0.1
101,782 - LRK53_RS00460 0.23 -0.6
101,802 + LRK53_RS00460 0.26 -0.1

Or see this region's nucleotide sequence