Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06956 and MPMX19_06957 overlap by 8 nucleotides MPMX19_06957 and MPMX19_06958 overlap by 4 nucleotides MPMX19_06958 and MPMX19_06959 are separated by 164 nucleotides
MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077
_06956
MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846
_06957
MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931
_06958
MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325
_06959
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.016 kb on + strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.896 kb on - strand at 233.896 kb on - strand at 233.896 kb on - strand at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.826 kb on - strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.038 kb on - strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.050 kb on - strand at 235.059 kb on + strand at 235.059 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.230 kb on - strand, within MPMX19_06959 at 235.382 kb on + strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.398 kb on - strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.787 kb on + strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 233,016 + -0.3 233,100 - +0.2 233,100 - +0.0 233,100 - +1.2 233,100 - +1.3 233,100 - -1.9 233,100 - -0.4 233,100 - -2.5 233,100 - +0.5 233,100 - +0.1 233,100 - +1.2 233,100 - +0.4 233,100 - +2.5 233,100 - -0.7 233,100 - -1.3 233,102 - +1.3 233,102 - -1.5 233,102 - +0.3 233,102 - -0.3 233,102 - -2.1 233,102 - -1.8 233,102 - -1.3 233,102 - -0.8 233,102 - -0.3 233,102 - -0.7 233,102 - -0.8 233,102 - -2.1 233,102 - -1.5 233,102 - -0.2 233,102 - +0.5 233,102 - -1.5 233,102 - -0.3 233,102 - -0.3 233,102 - -0.4 233,102 - -0.6 233,102 - +0.4 233,102 - -2.4 233,102 - +0.1 233,102 - -0.6 233,102 - -0.2 233,102 - -0.0 233,102 - -0.1 233,102 - -1.5 233,102 - -2.7 233,102 - +0.5 233,102 - -0.7 233,102 - -1.5 233,102 - -0.5 233,102 - -0.8 233,102 - -1.3 233,102 - +0.5 233,102 - +0.1 233,102 - +0.4 233,102 - -0.6 233,895 + +1.2 233,895 + -1.3 233,895 + +1.5 233,895 + -2.4 233,896 - -2.1 233,896 - +1.2 233,896 - -0.2 234,216 + MPMX19_06958 0.34 -2.9 234,216 + MPMX19_06958 0.34 -0.2 234,216 + MPMX19_06958 0.34 -0.2 234,216 + MPMX19_06958 0.34 +0.9 234,216 + MPMX19_06958 0.34 -2.1 234,216 + MPMX19_06958 0.34 -2.4 234,217 - MPMX19_06958 0.34 -1.8 234,217 - MPMX19_06958 0.34 -1.3 234,217 - MPMX19_06958 0.34 -1.2 234,217 - MPMX19_06958 0.34 +1.3 234,217 - MPMX19_06958 0.34 -0.3 234,217 - MPMX19_06958 0.34 -0.1 234,217 - MPMX19_06958 0.34 -0.6 234,217 - MPMX19_06958 0.34 -1.1 234,468 + MPMX19_06958 0.57 -0.5 234,468 + MPMX19_06958 0.57 -1.0 234,469 - MPMX19_06958 0.57 -0.4 234,469 - MPMX19_06958 0.57 -0.3 234,826 - -0.6 235,031 + -1.3 235,031 + -1.7 235,031 + +1.0 235,032 - -0.6 235,032 - -2.1 235,032 - -0.2 235,032 - -1.3 235,032 - +0.0 235,033 + -1.1 235,033 + -1.7 235,033 + -0.2 235,033 + -1.2 235,033 + -1.2 235,033 + -0.8 235,033 + -0.3 235,033 + -0.7 235,033 + +0.6 235,033 + -2.0 235,034 - +0.3 235,034 - -2.8 235,034 - +0.1 235,034 - -0.5 235,034 - -1.3 235,034 - +0.5 235,034 - -0.5 235,034 - -0.4 235,034 - +0.4 235,034 - -2.1 235,034 - +1.2 235,037 + -1.6 235,037 + -0.5 235,037 + -0.4 235,037 + -0.2 235,037 + -0.3 235,037 + -0.8 235,037 + -0.8 235,037 + -0.2 235,037 + -1.5 235,038 - -0.8 235,049 + +2.2 235,049 + +0.2 235,049 + +1.0 235,050 - -0.6 235,059 + -0.2 235,059 + -0.1 235,097 + -0.8 235,097 + -0.7 235,097 + +0.4 235,097 + +0.3 235,097 + -1.7 235,097 + -1.6 235,097 + -0.7 235,097 + -0.7 235,097 + -0.4 235,098 - +1.1 235,098 - +0.8 235,098 - +0.3 235,178 + +0.5 235,178 + -1.5 235,178 + -2.7 235,178 + -1.3 235,178 + -1.2 235,178 + -0.2 235,178 + -2.7 235,178 + +0.3 235,178 + -1.3 235,178 + +0.2 235,178 + -1.5 235,179 - -0.5 235,179 - -0.5 235,179 - -0.3 235,179 - -0.7 235,179 - +1.0 235,179 - -0.6 235,179 - -1.7 235,181 + +0.9 235,181 + -0.6 235,181 + -0.2 235,182 - -1.8 235,182 - -2.1 235,182 - +1.2 235,229 + MPMX19_06959 0.11 -0.9 235,229 + MPMX19_06959 0.11 -0.3 235,229 + MPMX19_06959 0.11 -2.9 235,229 + MPMX19_06959 0.11 +0.2 235,230 - MPMX19_06959 0.11 +0.1 235,382 + MPMX19_06959 0.23 -1.5 235,383 - MPMX19_06959 0.23 -0.0 235,383 - MPMX19_06959 0.23 -0.8 235,397 + MPMX19_06959 0.24 -0.5 235,397 + MPMX19_06959 0.24 +0.5 235,398 - MPMX19_06959 0.25 -0.5 235,472 + MPMX19_06959 0.31 -0.7 235,472 + MPMX19_06959 0.31 -1.1 235,472 + MPMX19_06959 0.31 -0.3 235,473 - MPMX19_06959 0.31 -2.3 235,473 - MPMX19_06959 0.31 -1.9 235,473 - MPMX19_06959 0.31 -0.8 235,473 - MPMX19_06959 0.31 +0.2 235,787 + MPMX19_06959 0.56 +1.3 235,788 - MPMX19_06959 0.56 -0.6 235,788 - MPMX19_06959 0.56 +1.5 235,788 - MPMX19_06959 0.56 -0.1 235,806 - MPMX19_06959 0.58 +0.4 235,806 - MPMX19_06959 0.58 +1.7 235,806 - MPMX19_06959 0.58 -0.1 235,806 - MPMX19_06959 0.58 -0.0 235,806 - MPMX19_06959 0.58 -2.2 235,862 + MPMX19_06959 0.62 -0.1 235,862 + MPMX19_06959 0.62 +0.4 235,862 + MPMX19_06959 0.62 +0.9 235,863 - MPMX19_06959 0.62 -1.7 235,863 - MPMX19_06959 0.62 -0.5 235,871 + MPMX19_06959 0.63 -0.5 235,871 + MPMX19_06959 0.63 -1.8 235,871 + MPMX19_06959 0.63 -0.2 235,871 + MPMX19_06959 0.63 +0.7 235,871 + MPMX19_06959 0.63 -0.6 235,872 - MPMX19_06959 0.63 +0.2 235,872 - MPMX19_06959 0.63 -0.9
Or see this region's nucleotide sequence