Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06761 and MPMX19_06762 are separated by 120 nucleotides MPMX19_06762 and MPMX19_06763 are separated by 88 nucleotides
MPMX19_06761: MPMX19_06761 - HTH-type transcriptional regulator TauR, at 27,121 to 28,596
_06761
MPMX19_06762: MPMX19_06762 - Peptide deformylase, at 28,717 to 29,253
_06762
MPMX19_06763: MPMX19_06763 - hypothetical protein, at 29,342 to 30,259
_06763
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.851 kb on + strand, within MPMX19_06761 at 27.851 kb on + strand, within MPMX19_06761 at 27.851 kb on + strand, within MPMX19_06761 at 27.851 kb on + strand, within MPMX19_06761 at 27.851 kb on + strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.852 kb on - strand, within MPMX19_06761 at 27.884 kb on + strand, within MPMX19_06761 at 27.885 kb on - strand, within MPMX19_06761 at 28.030 kb on + strand, within MPMX19_06761 at 28.108 kb on + strand, within MPMX19_06761 at 28.108 kb on + strand, within MPMX19_06761 at 28.108 kb on + strand, within MPMX19_06761 at 28.109 kb on - strand, within MPMX19_06761 at 28.109 kb on - strand, within MPMX19_06761 at 28.480 kb on - strand at 28.513 kb on + strand at 28.566 kb on - strand at 28.566 kb on - strand at 28.649 kb on + strand at 28.649 kb on + strand at 28.650 kb on - strand at 28.650 kb on - strand at 28.650 kb on - strand at 28.650 kb on - strand at 28.650 kb on - strand at 28.805 kb on + strand, within MPMX19_06762 at 28.908 kb on - strand, within MPMX19_06762 at 28.908 kb on - strand, within MPMX19_06762 at 28.908 kb on - strand, within MPMX19_06762 at 29.415 kb on + strand at 29.415 kb on + strand at 29.415 kb on + strand at 29.415 kb on + strand at 29.415 kb on + strand at 29.415 kb on + strand at 29.415 kb on + strand at 29.416 kb on - strand at 29.416 kb on - strand at 29.416 kb on - strand at 29.416 kb on - strand at 29.535 kb on + strand, within MPMX19_06763 at 29.535 kb on + strand, within MPMX19_06763 at 29.572 kb on - strand, within MPMX19_06763 at 29.709 kb on + strand, within MPMX19_06763 at 29.710 kb on - strand, within MPMX19_06763 at 29.742 kb on + strand, within MPMX19_06763 at 29.742 kb on + strand, within MPMX19_06763 at 29.742 kb on + strand, within MPMX19_06763 at 29.743 kb on - strand, within MPMX19_06763 at 29.919 kb on + strand, within MPMX19_06763 at 29.920 kb on - strand, within MPMX19_06763 at 30.090 kb on + strand, within MPMX19_06763 at 30.091 kb on - strand, within MPMX19_06763 at 30.091 kb on - strand, within MPMX19_06763
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 27,851 + MPMX19_06761 0.49 -1.2 27,851 + MPMX19_06761 0.49 +0.1 27,851 + MPMX19_06761 0.49 +0.1 27,851 + MPMX19_06761 0.49 -0.4 27,851 + MPMX19_06761 0.49 +1.3 27,852 - MPMX19_06761 0.50 -1.3 27,852 - MPMX19_06761 0.50 -2.2 27,852 - MPMX19_06761 0.50 -0.6 27,852 - MPMX19_06761 0.50 -1.5 27,852 - MPMX19_06761 0.50 -2.4 27,852 - MPMX19_06761 0.50 -1.3 27,852 - MPMX19_06761 0.50 -3.0 27,852 - MPMX19_06761 0.50 -0.1 27,884 + MPMX19_06761 0.52 +0.4 27,885 - MPMX19_06761 0.52 +1.5 28,030 + MPMX19_06761 0.62 -1.1 28,108 + MPMX19_06761 0.67 -1.5 28,108 + MPMX19_06761 0.67 -0.1 28,108 + MPMX19_06761 0.67 -1.4 28,109 - MPMX19_06761 0.67 +0.5 28,109 - MPMX19_06761 0.67 -1.3 28,480 - -0.4 28,513 + -2.1 28,566 - +0.3 28,566 - -1.2 28,649 + +2.5 28,649 + -1.0 28,650 - +1.2 28,650 - +1.4 28,650 - -0.2 28,650 - -0.8 28,650 - -0.6 28,805 + MPMX19_06762 0.16 -1.3 28,908 - MPMX19_06762 0.36 -0.5 28,908 - MPMX19_06762 0.36 -0.7 28,908 - MPMX19_06762 0.36 -0.8 29,415 + +0.1 29,415 + -1.0 29,415 + +0.1 29,415 + -1.2 29,415 + -0.7 29,415 + -0.7 29,415 + -0.1 29,416 - -0.5 29,416 - +0.6 29,416 - +1.2 29,416 - +0.6 29,535 + MPMX19_06763 0.21 -0.8 29,535 + MPMX19_06763 0.21 +1.5 29,572 - MPMX19_06763 0.25 -1.9 29,709 + MPMX19_06763 0.40 -0.5 29,710 - MPMX19_06763 0.40 -0.3 29,742 + MPMX19_06763 0.44 -0.5 29,742 + MPMX19_06763 0.44 -1.3 29,742 + MPMX19_06763 0.44 +1.1 29,743 - MPMX19_06763 0.44 -1.3 29,919 + MPMX19_06763 0.63 -0.6 29,920 - MPMX19_06763 0.63 -0.2 30,090 + MPMX19_06763 0.81 +0.5 30,091 - MPMX19_06763 0.82 +0.7 30,091 - MPMX19_06763 0.82 -0.7
Or see this region's nucleotide sequence