Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06468

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06467 and MPMX19_06468 are separated by 133 nucleotidesMPMX19_06468 and MPMX19_06469 are separated by 30 nucleotides MPMX19_06467: MPMX19_06467 - hypothetical protein, at 250,606 to 251,637 _06467 MPMX19_06468: MPMX19_06468 - Putative acyl-CoA dehydrogenase YdbM, at 251,771 to 252,973 _06468 MPMX19_06469: MPMX19_06469 - hypothetical protein, at 253,004 to 254,002 _06469 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 250.805 kb on + strand, within MPMX19_06467at 250.805 kb on + strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.958 kb on + strand, within MPMX19_06467at 251.004 kb on - strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.115 kb on - strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.508 kb on - strand, within MPMX19_06467at 251.932 kb on + strand, within MPMX19_06468at 251.932 kb on + strand, within MPMX19_06468at 251.952 kb on + strand, within MPMX19_06468at 251.952 kb on + strand, within MPMX19_06468at 251.953 kb on - strand, within MPMX19_06468at 252.328 kb on + strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.856 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.092 kb on + strandat 253.092 kb on + strandat 253.093 kb on - strandat 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.233 kb on + strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.267 kb on + strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.393 kb on + strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
250,805 + MPMX19_06467 0.19 +0.5
250,805 + MPMX19_06467 0.19 -0.7
250,881 - MPMX19_06467 0.27 -1.9
250,881 - MPMX19_06467 0.27 -0.6
250,881 - MPMX19_06467 0.27 -0.0
250,881 - MPMX19_06467 0.27 +0.7
250,881 - MPMX19_06467 0.27 +0.7
250,958 + MPMX19_06467 0.34 -0.6
251,004 - MPMX19_06467 0.39 -0.1
251,114 + MPMX19_06467 0.49 +1.7
251,114 + MPMX19_06467 0.49 +0.1
251,115 - MPMX19_06467 0.49 +0.9
251,495 + MPMX19_06467 0.86 +0.4
251,495 + MPMX19_06467 0.86 -1.1
251,507 + MPMX19_06467 0.87 -2.3
251,507 + MPMX19_06467 0.87 +0.1
251,507 + MPMX19_06467 0.87 +1.0
251,507 + MPMX19_06467 0.87 -0.5
251,508 - MPMX19_06467 0.87 -0.9
251,932 + MPMX19_06468 0.13 -2.0
251,932 + MPMX19_06468 0.13 -1.1
251,952 + MPMX19_06468 0.15 +1.0
251,952 + MPMX19_06468 0.15 +1.1
251,953 - MPMX19_06468 0.15 +1.1
252,328 + MPMX19_06468 0.46 +0.6
252,329 - MPMX19_06468 0.46 +0.7
252,329 - MPMX19_06468 0.46 -3.6
252,580 + MPMX19_06468 0.67 -0.2
252,580 + MPMX19_06468 0.67 +0.5
252,580 + MPMX19_06468 0.67 -0.4
252,581 - MPMX19_06468 0.67 -1.4
252,581 - MPMX19_06468 0.67 -1.6
252,675 + MPMX19_06468 0.75 +0.1
252,675 + MPMX19_06468 0.75 -0.7
252,675 + MPMX19_06468 0.75 +0.5
252,675 + MPMX19_06468 0.75 -1.0
252,675 + MPMX19_06468 0.75 -0.1
252,675 + MPMX19_06468 0.75 -0.1
252,675 + MPMX19_06468 0.75 -1.7
252,675 + MPMX19_06468 0.75 -2.1
252,675 + MPMX19_06468 0.75 -1.7
252,675 + MPMX19_06468 0.75 +0.2
252,675 + MPMX19_06468 0.75 +1.4
252,676 - MPMX19_06468 0.75 +1.0
252,676 - MPMX19_06468 0.75 +0.1
252,676 - MPMX19_06468 0.75 +0.7
252,676 - MPMX19_06468 0.75 +0.4
252,676 - MPMX19_06468 0.75 -0.3
252,676 - MPMX19_06468 0.75 -0.4
252,676 - MPMX19_06468 0.75 -0.3
252,676 - MPMX19_06468 0.75 -0.3
252,676 - MPMX19_06468 0.75 -0.2
252,676 - MPMX19_06468 0.75 +1.1
252,676 - MPMX19_06468 0.75 -0.7
252,676 - MPMX19_06468 0.75 +1.6
252,676 - MPMX19_06468 0.75 +0.3
252,676 - MPMX19_06468 0.75 -0.4
252,676 - MPMX19_06468 0.75 +0.5
252,676 - MPMX19_06468 0.75 +0.5
252,676 - MPMX19_06468 0.75 -1.5
252,676 - MPMX19_06468 0.75 -0.5
252,676 - MPMX19_06468 0.75 +0.1
252,676 - MPMX19_06468 0.75 -0.8
252,676 - MPMX19_06468 0.75 +0.5
252,676 - MPMX19_06468 0.75 -0.5
252,676 - MPMX19_06468 0.75 -1.5
252,856 - -0.0
253,061 - -0.6
253,061 - -0.6
253,061 - -2.5
253,061 - +1.2
253,092 + -0.1
253,092 + +0.9
253,093 - +0.5
253,203 + MPMX19_06469 0.20 -0.5
253,203 + MPMX19_06469 0.20 -0.5
253,203 + MPMX19_06469 0.20 +1.3
253,203 + MPMX19_06469 0.20 -1.3
253,203 + MPMX19_06469 0.20 -1.5
253,204 - MPMX19_06469 0.20 +0.3
253,204 - MPMX19_06469 0.20 -0.0
253,204 - MPMX19_06469 0.20 +1.0
253,204 - MPMX19_06469 0.20 +0.7
253,233 + MPMX19_06469 0.23 +0.9
253,234 - MPMX19_06469 0.23 +1.0
253,234 - MPMX19_06469 0.23 -2.2
253,234 - MPMX19_06469 0.23 +0.7
253,234 - MPMX19_06469 0.23 +0.5
253,234 - MPMX19_06469 0.23 +1.0
253,234 - MPMX19_06469 0.23 +0.7
253,234 - MPMX19_06469 0.23 +0.3
253,234 - MPMX19_06469 0.23 -1.6
253,267 + MPMX19_06469 0.26 +0.8
253,268 - MPMX19_06469 0.26 +0.2
253,268 - MPMX19_06469 0.26 -1.1
253,268 - MPMX19_06469 0.26 -0.6
253,268 - MPMX19_06469 0.26 -0.5
253,366 + MPMX19_06469 0.36 -2.3
253,366 + MPMX19_06469 0.36 +1.4
253,366 + MPMX19_06469 0.36 -1.5
253,366 + MPMX19_06469 0.36 -0.2
253,367 - MPMX19_06469 0.36 +2.3
253,367 - MPMX19_06469 0.36 +0.3
253,367 - MPMX19_06469 0.36 -1.1
253,367 - MPMX19_06469 0.36 -0.5
253,367 - MPMX19_06469 0.36 -0.3
253,367 - MPMX19_06469 0.36 -1.0
253,393 + MPMX19_06469 0.39 -0.5
253,394 - MPMX19_06469 0.39 -1.1
253,394 - MPMX19_06469 0.39 -0.2
253,394 - MPMX19_06469 0.39 -0.0
253,463 + MPMX19_06469 0.46 -0.5
253,463 + MPMX19_06469 0.46 +0.2
253,463 + MPMX19_06469 0.46 +1.0
253,464 - MPMX19_06469 0.46 -1.5
253,464 - MPMX19_06469 0.46 +1.3
253,464 - MPMX19_06469 0.46 -0.5

Or see this region's nucleotide sequence