Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06382 and MPMX19_06383 are separated by 301 nucleotides MPMX19_06383 and MPMX19_06384 are separated by 172 nucleotides
MPMX19_06382: MPMX19_06382 - putative MFS-type transporter YfcJ, at 150,325 to 151,506
_06382
MPMX19_06383: MPMX19_06383 - hypothetical protein, at 151,808 to 152,494
_06383
MPMX19_06384: MPMX19_06384 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 152,667 to 153,656
_06384
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.066 kb on + strand, within MPMX19_06382 at 151.067 kb on - strand, within MPMX19_06382 at 151.067 kb on - strand, within MPMX19_06382 at 151.103 kb on - strand, within MPMX19_06382 at 151.345 kb on + strand, within MPMX19_06382 at 151.345 kb on + strand, within MPMX19_06382 at 151.345 kb on + strand, within MPMX19_06382 at 151.345 kb on + strand, within MPMX19_06382 at 151.346 kb on - strand, within MPMX19_06382 at 151.400 kb on + strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.401 kb on - strand at 151.504 kb on + strand at 151.505 kb on - strand at 151.505 kb on - strand at 151.505 kb on - strand at 151.609 kb on + strand at 151.609 kb on + strand at 151.609 kb on + strand at 151.609 kb on + strand at 151.610 kb on - strand at 151.610 kb on - strand at 151.610 kb on - strand at 151.635 kb on - strand at 151.635 kb on - strand at 151.643 kb on + strand at 151.643 kb on + strand at 151.643 kb on + strand at 151.644 kb on - strand at 151.644 kb on - strand at 151.644 kb on - strand at 151.798 kb on + strand at 151.798 kb on + strand at 151.798 kb on + strand at 151.810 kb on - strand at 151.827 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.839 kb on - strand at 151.883 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.924 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.287 kb on + strand, within MPMX19_06383 at 152.288 kb on - strand, within MPMX19_06383 at 152.421 kb on + strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.496 kb on - strand at 152.669 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.894 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.213 kb on - strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 151,066 + MPMX19_06382 0.63 -1.1 151,067 - MPMX19_06382 0.63 -0.1 151,067 - MPMX19_06382 0.63 -0.1 151,103 - MPMX19_06382 0.66 -0.2 151,345 + MPMX19_06382 0.86 -2.4 151,345 + MPMX19_06382 0.86 -1.7 151,345 + MPMX19_06382 0.86 -0.3 151,345 + MPMX19_06382 0.86 -0.9 151,346 - MPMX19_06382 0.86 -0.5 151,400 + -2.1 151,401 - -1.3 151,401 - +1.4 151,401 - +0.2 151,401 - +0.9 151,401 - -2.0 151,401 - +0.1 151,401 - -1.5 151,401 - -1.3 151,504 + -1.3 151,505 - +0.4 151,505 - -0.5 151,505 - +0.0 151,609 + +1.4 151,609 + -0.6 151,609 + -1.3 151,609 + -0.6 151,610 - -1.1 151,610 - +1.0 151,610 - -0.2 151,635 - -0.7 151,635 - -0.6 151,643 + -0.6 151,643 + -1.0 151,643 + -0.3 151,644 - +1.5 151,644 - -1.0 151,644 - -0.8 151,798 + -1.3 151,798 + +0.2 151,798 + +0.3 151,810 - -1.4 151,827 + -2.2 151,838 + +0.0 151,838 + +0.3 151,838 + +0.4 151,839 - +0.3 151,883 + MPMX19_06383 0.11 -1.0 151,923 + MPMX19_06383 0.17 -0.8 151,923 + MPMX19_06383 0.17 -2.4 151,923 + MPMX19_06383 0.17 -0.3 151,924 - MPMX19_06383 0.17 -1.9 152,028 - MPMX19_06383 0.32 +1.7 152,028 - MPMX19_06383 0.32 -1.6 152,287 + MPMX19_06383 0.70 -1.6 152,288 - MPMX19_06383 0.70 +2.3 152,421 + MPMX19_06383 0.89 -1.1 152,422 - MPMX19_06383 0.89 -0.6 152,422 - MPMX19_06383 0.89 -0.7 152,422 - MPMX19_06383 0.89 -2.1 152,490 + +0.5 152,490 + -0.9 152,490 + -0.8 152,490 + -1.7 152,490 + -0.7 152,490 + +1.0 152,490 + +1.1 152,490 + -1.1 152,491 - -0.3 152,491 - +0.5 152,491 - -1.0 152,491 - -1.1 152,491 - +0.1 152,491 - -1.4 152,491 - +0.3 152,494 + -0.1 152,494 + -1.5 152,494 + -0.2 152,494 + -0.3 152,494 + +1.1 152,494 + -0.6 152,496 - +0.1 152,669 - -0.3 152,700 - +0.2 152,700 - -0.2 152,700 - -0.1 152,700 - -0.1 152,700 - -1.5 152,721 + +0.7 152,721 + +1.0 152,721 + +0.3 152,721 + -0.2 152,721 + -1.7 152,721 + -0.4 152,721 + -1.5 152,721 + -0.1 152,721 + -0.4 152,721 + +0.1 152,721 + -0.5 152,722 - +0.7 152,722 - -0.1 152,722 - -1.2 152,722 - +1.1 152,722 - -0.5 152,722 - +0.3 152,722 - +0.5 152,722 - -0.9 152,722 - -0.9 152,722 - -0.2 152,722 - -1.1 152,855 + MPMX19_06384 0.19 -0.6 152,855 + MPMX19_06384 0.19 -2.5 152,855 + MPMX19_06384 0.19 -1.1 152,855 + MPMX19_06384 0.19 -2.3 152,855 + MPMX19_06384 0.19 -1.1 152,855 + MPMX19_06384 0.19 +1.4 152,855 + MPMX19_06384 0.19 +0.3 152,855 + MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 -0.2 152,856 - MPMX19_06384 0.19 -0.0 152,856 - MPMX19_06384 0.19 +0.1 152,856 - MPMX19_06384 0.19 +1.1 152,856 - MPMX19_06384 0.19 -0.9 152,856 - MPMX19_06384 0.19 +0.8 152,856 - MPMX19_06384 0.19 -0.5 152,856 - MPMX19_06384 0.19 +0.5 152,856 - MPMX19_06384 0.19 +0.9 152,856 - MPMX19_06384 0.19 -0.7 152,856 - MPMX19_06384 0.19 -1.7 152,856 - MPMX19_06384 0.19 -1.1 152,856 - MPMX19_06384 0.19 -0.9 152,856 - MPMX19_06384 0.19 -1.4 152,856 - MPMX19_06384 0.19 +0.2 152,856 - MPMX19_06384 0.19 -0.3 152,894 + MPMX19_06384 0.23 +0.1 152,899 + MPMX19_06384 0.23 -1.5 152,899 + MPMX19_06384 0.23 -2.3 152,899 + MPMX19_06384 0.23 -2.3 152,899 + MPMX19_06384 0.23 -1.1 152,899 + MPMX19_06384 0.23 +1.0 152,899 + MPMX19_06384 0.23 +1.7 152,899 + MPMX19_06384 0.23 +0.1 152,899 + MPMX19_06384 0.23 -0.9 152,899 + MPMX19_06384 0.23 -0.9 152,899 + MPMX19_06384 0.23 -1.3 152,900 - MPMX19_06384 0.24 +0.2 152,900 - MPMX19_06384 0.24 +0.1 152,900 - MPMX19_06384 0.24 -0.1 152,900 - MPMX19_06384 0.24 +0.1 152,900 - MPMX19_06384 0.24 -0.2 152,900 - MPMX19_06384 0.24 -2.0 152,900 - MPMX19_06384 0.24 -0.5 152,900 - MPMX19_06384 0.24 +0.0 152,900 - MPMX19_06384 0.24 +0.3 152,900 - MPMX19_06384 0.24 +1.7 153,112 + MPMX19_06384 0.45 -1.5 153,112 + MPMX19_06384 0.45 +0.2 153,113 - MPMX19_06384 0.45 -0.6 153,113 - MPMX19_06384 0.45 +1.1 153,153 - MPMX19_06384 0.49 -0.3 153,153 - MPMX19_06384 0.49 -1.5 153,213 - MPMX19_06384 0.55 -1.7 153,303 + MPMX19_06384 0.64 +0.5 153,303 + MPMX19_06384 0.64 -1.2 153,337 + MPMX19_06384 0.68 +0.9 153,337 + MPMX19_06384 0.68 -0.2 153,337 + MPMX19_06384 0.68 -1.3 153,337 + MPMX19_06384 0.68 +1.1 153,337 + MPMX19_06384 0.68 -1.0 153,337 + MPMX19_06384 0.68 +0.1 153,337 + MPMX19_06384 0.68 +0.8 153,338 - MPMX19_06384 0.68 +0.9 153,338 - MPMX19_06384 0.68 -0.8 153,338 - MPMX19_06384 0.68 -0.5 153,338 - MPMX19_06384 0.68 -0.1 153,338 - MPMX19_06384 0.68 -0.7 153,338 - MPMX19_06384 0.68 -2.4 153,338 - MPMX19_06384 0.68 +0.3 153,338 - MPMX19_06384 0.68 -0.9 153,338 - MPMX19_06384 0.68 +0.7 153,338 - MPMX19_06384 0.68 -1.5 153,338 - MPMX19_06384 0.68 -0.6 153,338 - MPMX19_06384 0.68 -0.1 153,419 + MPMX19_06384 0.76 -0.6 153,419 + MPMX19_06384 0.76 -0.3 153,419 + MPMX19_06384 0.76 -0.1 153,419 + MPMX19_06384 0.76 -0.9 153,419 + MPMX19_06384 0.76 -0.4 153,419 + MPMX19_06384 0.76 +0.3 153,420 - MPMX19_06384 0.76 +0.3 153,420 - MPMX19_06384 0.76 +2.4 153,420 - MPMX19_06384 0.76 -0.1 153,420 - MPMX19_06384 0.76 -0.1 153,420 - MPMX19_06384 0.76 -0.6 153,420 - MPMX19_06384 0.76 +1.1 153,420 - MPMX19_06384 0.76 +1.1 153,420 - MPMX19_06384 0.76 +0.1 153,420 - MPMX19_06384 0.76 +1.1 153,466 + MPMX19_06384 0.81 +2.3 153,466 + MPMX19_06384 0.81 +0.1 153,466 + MPMX19_06384 0.81 +0.5 153,466 + MPMX19_06384 0.81 +0.6 153,467 - MPMX19_06384 0.81 -1.0 153,467 - MPMX19_06384 0.81 -2.3 153,467 - MPMX19_06384 0.81 -1.0 153,467 - MPMX19_06384 0.81 +0.5 153,467 - MPMX19_06384 0.81 -1.7 153,467 - MPMX19_06384 0.81 +1.4 153,467 - MPMX19_06384 0.81 -0.3
Or see this region's nucleotide sequence