Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06138

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06136 and MPMX19_06137 are separated by 3 nucleotidesMPMX19_06137 and MPMX19_06138 are separated by 146 nucleotidesMPMX19_06138 and MPMX19_06139 are separated by 156 nucleotides MPMX19_06136: MPMX19_06136 - Fructose dehydrogenase cytochrome subunit, at 323,833 to 324,729 _06136 MPMX19_06137: MPMX19_06137 - hypothetical protein, at 324,733 to 325,218 _06137 MPMX19_06138: MPMX19_06138 - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase, at 325,365 to 325,949 _06138 MPMX19_06139: MPMX19_06139 - Replicative DNA helicase, at 326,106 to 327,611 _06139 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.368 kb on + strand, within MPMX19_06136at 324.369 kb on - strand, within MPMX19_06136at 324.369 kb on - strand, within MPMX19_06136at 324.369 kb on - strand, within MPMX19_06136at 324.369 kb on - strand, within MPMX19_06136at 324.369 kb on - strand, within MPMX19_06136at 324.377 kb on + strand, within MPMX19_06136at 324.377 kb on + strand, within MPMX19_06136at 324.378 kb on - strand, within MPMX19_06136at 324.378 kb on - strand, within MPMX19_06136at 324.498 kb on + strand, within MPMX19_06136at 324.499 kb on - strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.500 kb on + strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.501 kb on - strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.605 kb on + strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.606 kb on - strand, within MPMX19_06136at 324.645 kb on + strandat 324.645 kb on + strandat 324.645 kb on + strandat 324.645 kb on + strandat 324.645 kb on + strandat 324.646 kb on - strandat 324.875 kb on + strand, within MPMX19_06137at 324.875 kb on + strand, within MPMX19_06137at 324.875 kb on + strand, within MPMX19_06137at 324.875 kb on + strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 324.876 kb on - strand, within MPMX19_06137at 325.246 kb on + strandat 325.246 kb on + strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.289 kb on + strandat 325.289 kb on + strandat 325.289 kb on + strandat 325.290 kb on - strandat 325.331 kb on + strandat 325.331 kb on + strandat 325.332 kb on - strandat 325.393 kb on - strandat 325.393 kb on - strandat 325.393 kb on - strandat 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.785 kb on + strand, within MPMX19_06138at 325.786 kb on - strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.861 kb on - strand, within MPMX19_06138at 326.093 kb on + strandat 326.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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324,368 + MPMX19_06136 0.60 -0.5
324,368 + MPMX19_06136 0.60 -1.0
324,368 + MPMX19_06136 0.60 -1.7
324,368 + MPMX19_06136 0.60 -0.3
324,368 + MPMX19_06136 0.60 -2.6
324,368 + MPMX19_06136 0.60 +2.2
324,368 + MPMX19_06136 0.60 +1.6
324,368 + MPMX19_06136 0.60 -0.3
324,369 - MPMX19_06136 0.60 +0.0
324,369 - MPMX19_06136 0.60 +0.1
324,369 - MPMX19_06136 0.60 +0.1
324,369 - MPMX19_06136 0.60 +1.0
324,369 - MPMX19_06136 0.60 +0.2
324,377 + MPMX19_06136 0.61 +0.3
324,377 + MPMX19_06136 0.61 +0.0
324,378 - MPMX19_06136 0.61 +2.0
324,378 - MPMX19_06136 0.61 -0.6
324,498 + MPMX19_06136 0.74 -0.7
324,499 - MPMX19_06136 0.74 -0.7
324,500 + MPMX19_06136 0.74 -0.7
324,500 + MPMX19_06136 0.74 +0.3
324,500 + MPMX19_06136 0.74 -0.0
324,500 + MPMX19_06136 0.74 +0.2
324,500 + MPMX19_06136 0.74 +1.1
324,500 + MPMX19_06136 0.74 -0.8
324,500 + MPMX19_06136 0.74 -1.0
324,500 + MPMX19_06136 0.74 -0.7
324,500 + MPMX19_06136 0.74 +0.2
324,500 + MPMX19_06136 0.74 -1.0
324,500 + MPMX19_06136 0.74 +1.6
324,500 + MPMX19_06136 0.74 +0.6
324,500 + MPMX19_06136 0.74 -1.4
324,500 + MPMX19_06136 0.74 -0.6
324,500 + MPMX19_06136 0.74 -0.6
324,500 + MPMX19_06136 0.74 -0.2
324,500 + MPMX19_06136 0.74 +0.7
324,500 + MPMX19_06136 0.74 -0.6
324,500 + MPMX19_06136 0.74 +1.1
324,500 + MPMX19_06136 0.74 -2.6
324,500 + MPMX19_06136 0.74 -0.7
324,500 + MPMX19_06136 0.74 +0.4
324,500 + MPMX19_06136 0.74 -0.1
324,500 + MPMX19_06136 0.74 +1.3
324,500 + MPMX19_06136 0.74 +0.1
324,500 + MPMX19_06136 0.74 +0.3
324,501 - MPMX19_06136 0.74 -0.2
324,501 - MPMX19_06136 0.74 -0.5
324,501 - MPMX19_06136 0.74 +0.2
324,501 - MPMX19_06136 0.74 -0.8
324,501 - MPMX19_06136 0.74 +1.6
324,501 - MPMX19_06136 0.74 -0.7
324,501 - MPMX19_06136 0.74 +0.8
324,501 - MPMX19_06136 0.74 +0.4
324,501 - MPMX19_06136 0.74 -1.4
324,501 - MPMX19_06136 0.74 -0.0
324,501 - MPMX19_06136 0.74 -1.6
324,501 - MPMX19_06136 0.74 -0.2
324,501 - MPMX19_06136 0.74 +0.1
324,501 - MPMX19_06136 0.74 -0.6
324,501 - MPMX19_06136 0.74 +1.2
324,501 - MPMX19_06136 0.74 +0.3
324,501 - MPMX19_06136 0.74 -2.8
324,501 - MPMX19_06136 0.74 -1.4
324,501 - MPMX19_06136 0.74 +1.4
324,501 - MPMX19_06136 0.74 +1.3
324,501 - MPMX19_06136 0.74 -1.4
324,501 - MPMX19_06136 0.74 +0.0
324,501 - MPMX19_06136 0.74 +0.2
324,501 - MPMX19_06136 0.74 -0.5
324,501 - MPMX19_06136 0.74 -2.0
324,501 - MPMX19_06136 0.74 -0.4
324,501 - MPMX19_06136 0.74 -0.6
324,501 - MPMX19_06136 0.74 -0.4
324,605 + MPMX19_06136 0.86 -0.1
324,605 + MPMX19_06136 0.86 -0.2
324,605 + MPMX19_06136 0.86 -1.7
324,605 + MPMX19_06136 0.86 -0.9
324,605 + MPMX19_06136 0.86 -1.6
324,605 + MPMX19_06136 0.86 -0.1
324,605 + MPMX19_06136 0.86 -0.3
324,605 + MPMX19_06136 0.86 +0.2
324,606 - MPMX19_06136 0.86 -0.1
324,606 - MPMX19_06136 0.86 +1.2
324,606 - MPMX19_06136 0.86 +0.7
324,606 - MPMX19_06136 0.86 +0.3
324,606 - MPMX19_06136 0.86 -1.6
324,606 - MPMX19_06136 0.86 -0.2
324,606 - MPMX19_06136 0.86 -0.8
324,606 - MPMX19_06136 0.86 -0.7
324,606 - MPMX19_06136 0.86 +0.7
324,645 + -0.8
324,645 + -0.8
324,645 + -1.6
324,645 + +1.0
324,645 + +0.2
324,646 - -0.2
324,875 + MPMX19_06137 0.29 -0.6
324,875 + MPMX19_06137 0.29 +0.8
324,875 + MPMX19_06137 0.29 +0.0
324,875 + MPMX19_06137 0.29 +0.7
324,876 - MPMX19_06137 0.29 +0.9
324,876 - MPMX19_06137 0.29 -2.8
324,876 - MPMX19_06137 0.29 -1.0
324,876 - MPMX19_06137 0.29 -2.1
324,876 - MPMX19_06137 0.29 +0.7
324,876 - MPMX19_06137 0.29 -0.3
324,876 - MPMX19_06137 0.29 -2.7
325,246 + +0.0
325,246 + +0.6
325,247 - +1.2
325,247 - -0.2
325,247 - +0.1
325,247 - +1.3
325,247 - +1.1
325,289 + -2.1
325,289 + -1.0
325,289 + -1.0
325,290 - -0.8
325,331 + +1.2
325,331 + +0.8
325,332 - -0.1
325,393 - -2.0
325,393 - -1.1
325,393 - +0.0
325,485 + MPMX19_06138 0.21 -0.4
325,485 + MPMX19_06138 0.21 -1.8
325,485 + MPMX19_06138 0.21 +2.0
325,485 + MPMX19_06138 0.21 -1.4
325,485 + MPMX19_06138 0.21 +0.1
325,485 + MPMX19_06138 0.21 +0.3
325,485 + MPMX19_06138 0.21 +0.6
325,485 + MPMX19_06138 0.21 -2.9
325,485 + MPMX19_06138 0.21 +0.9
325,486 - MPMX19_06138 0.21 +1.1
325,486 - MPMX19_06138 0.21 -0.7
325,486 - MPMX19_06138 0.21 +0.0
325,486 - MPMX19_06138 0.21 +1.2
325,486 - MPMX19_06138 0.21 -0.5
325,486 - MPMX19_06138 0.21 -0.4
325,486 - MPMX19_06138 0.21 +0.4
325,486 - MPMX19_06138 0.21 -0.1
325,486 - MPMX19_06138 0.21 -1.0
325,486 - MPMX19_06138 0.21 -0.4
325,785 + MPMX19_06138 0.72 +1.3
325,786 - MPMX19_06138 0.72 -1.0
325,817 + MPMX19_06138 0.77 -0.5
325,817 + MPMX19_06138 0.77 -0.2
325,817 + MPMX19_06138 0.77 -1.6
325,817 + MPMX19_06138 0.77 -0.9
325,817 + MPMX19_06138 0.77 -0.7
325,817 + MPMX19_06138 0.77 +0.3
325,817 + MPMX19_06138 0.77 -1.9
325,817 + MPMX19_06138 0.77 -0.4
325,817 + MPMX19_06138 0.77 -1.2
325,818 - MPMX19_06138 0.77 +0.5
325,818 - MPMX19_06138 0.77 -1.7
325,818 - MPMX19_06138 0.77 +1.6
325,818 - MPMX19_06138 0.77 +1.2
325,818 - MPMX19_06138 0.77 -1.7
325,818 - MPMX19_06138 0.77 -0.4
325,818 - MPMX19_06138 0.77 +1.6
325,818 - MPMX19_06138 0.77 +0.6
325,818 - MPMX19_06138 0.77 -0.1
325,818 - MPMX19_06138 0.77 -0.7
325,818 - MPMX19_06138 0.77 -1.6
325,861 - MPMX19_06138 0.85 +0.0
326,093 + -0.4
326,093 + -1.4

Or see this region's nucleotide sequence