Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05735

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05734 and MPMX19_05735 are separated by 366 nucleotidesMPMX19_05735 and MPMX19_05736 are separated by 76 nucleotidesMPMX19_05736 and MPMX19_05737 overlap by 4 nucleotides MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806 _05734 MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427 _05735 MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274 _05736 MPMX19_05737: MPMX19_05737 - hypothetical protein, at 454,271 to 454,717 _05737 Position (kb) 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1at 452.747 kb on + strandat 452.748 kb on - strandat 452.892 kb on + strandat 453.005 kb on - strandat 453.034 kb on - strandat 453.069 kb on + strandat 453.069 kb on + strandat 453.070 kb on - strandat 453.070 kb on - strandat 453.070 kb on - strandat 453.070 kb on - strandat 453.070 kb on - strandat 453.070 kb on - strandat 453.450 kb on - strandat 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.970 kb on - strand, within MPMX19_05736at 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
452,747 + -0.6
452,748 - -3.1
452,892 + -0.3
453,005 - -0.7
453,034 - +0.6
453,069 + -0.9
453,069 + +0.1
453,070 - -1.4
453,070 - -0.8
453,070 - +0.4
453,070 - -0.3
453,070 - +0.9
453,070 - -0.8
453,450 - -0.6
453,849 + MPMX19_05736 0.45 -1.5
453,849 + MPMX19_05736 0.45 +1.1
453,849 + MPMX19_05736 0.45 -0.8
453,849 + MPMX19_05736 0.45 +0.5
453,849 + MPMX19_05736 0.45 -0.6
453,849 + MPMX19_05736 0.45 +1.0
453,849 + MPMX19_05736 0.45 +1.2
453,849 + MPMX19_05736 0.45 +0.1
453,849 + MPMX19_05736 0.45 -0.2
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -0.4
453,849 + MPMX19_05736 0.45 -1.3
453,849 + MPMX19_05736 0.45 +0.3
453,849 + MPMX19_05736 0.45 +0.5
453,849 + MPMX19_05736 0.45 -1.6
453,849 + MPMX19_05736 0.45 -1.6
453,849 + MPMX19_05736 0.45 -2.0
453,849 + MPMX19_05736 0.45 +0.9
453,849 + MPMX19_05736 0.45 +0.0
453,849 + MPMX19_05736 0.45 +0.6
453,849 + MPMX19_05736 0.45 -0.7
453,849 + MPMX19_05736 0.45 -1.3
453,849 + MPMX19_05736 0.45 +1.4
453,849 + MPMX19_05736 0.45 +0.6
453,849 + MPMX19_05736 0.45 +0.0
453,849 + MPMX19_05736 0.45 -0.4
453,849 + MPMX19_05736 0.45 -0.5
453,849 + MPMX19_05736 0.45 +0.2
453,849 + MPMX19_05736 0.45 -0.7
453,849 + MPMX19_05736 0.45 -0.4
453,849 + MPMX19_05736 0.45 -1.3
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 +0.0
453,849 + MPMX19_05736 0.45 -1.5
453,849 + MPMX19_05736 0.45 +0.6
453,849 + MPMX19_05736 0.45 +1.0
453,849 + MPMX19_05736 0.45 -0.0
453,849 + MPMX19_05736 0.45 +0.5
453,849 + MPMX19_05736 0.45 -1.4
453,849 + MPMX19_05736 0.45 +0.5
453,850 - MPMX19_05736 0.45 +0.0
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 -0.2
453,850 - MPMX19_05736 0.45 +0.4
453,850 - MPMX19_05736 0.45 -0.7
453,850 - MPMX19_05736 0.45 +0.5
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -0.1
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 +1.1
453,850 - MPMX19_05736 0.45 -1.2
453,850 - MPMX19_05736 0.45 -1.4
453,850 - MPMX19_05736 0.45 +0.0
453,850 - MPMX19_05736 0.45 -0.5
453,850 - MPMX19_05736 0.45 -1.1
453,850 - MPMX19_05736 0.45 -0.5
453,850 - MPMX19_05736 0.45 -1.2
453,850 - MPMX19_05736 0.45 -0.1
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -0.9
453,850 - MPMX19_05736 0.45 -0.1
453,850 - MPMX19_05736 0.45 +0.6
453,850 - MPMX19_05736 0.45 -1.5
453,850 - MPMX19_05736 0.45 +0.0
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 +0.4
453,850 - MPMX19_05736 0.45 -1.2
453,850 - MPMX19_05736 0.45 +0.0
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 -1.4
453,850 - MPMX19_05736 0.45 +0.4
453,850 - MPMX19_05736 0.45 -1.3
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -1.7
453,850 - MPMX19_05736 0.45 +0.7
453,850 - MPMX19_05736 0.45 -0.5
453,850 - MPMX19_05736 0.45 -0.5
453,850 - MPMX19_05736 0.45 +1.1
453,850 - MPMX19_05736 0.45 +1.6
453,850 - MPMX19_05736 0.45 +0.0
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -0.5
453,850 - MPMX19_05736 0.45 -0.7
453,851 + MPMX19_05736 0.45 -0.4
453,851 + MPMX19_05736 0.45 -0.1
453,851 + MPMX19_05736 0.45 +0.0
453,852 - MPMX19_05736 0.45 -1.2
453,852 - MPMX19_05736 0.45 +1.6
453,852 - MPMX19_05736 0.45 -0.2
453,852 - MPMX19_05736 0.45 -0.4
453,852 - MPMX19_05736 0.45 +0.4
453,852 - MPMX19_05736 0.45 -0.6
453,852 - MPMX19_05736 0.45 -0.5
453,852 - MPMX19_05736 0.45 +0.0
453,852 - MPMX19_05736 0.45 -0.7
453,969 + MPMX19_05736 0.60 -0.5
453,969 + MPMX19_05736 0.60 -1.9
453,969 + MPMX19_05736 0.60 -0.4
453,970 - MPMX19_05736 0.60 -0.5
454,239 + -1.2
454,239 + +0.6
454,239 + -1.1
454,239 + -0.4
454,239 + -0.4
454,239 + +1.6
454,239 + +0.9
454,240 - +0.1
454,240 - +0.9
454,240 - -1.3
454,240 - -0.9
454,240 - -0.7
454,240 - -0.2

Or see this region's nucleotide sequence