Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05441 and MPMX19_05442 are separated by 161 nucleotides MPMX19_05442 and MPMX19_05443 are separated by 52 nucleotides MPMX19_05443 and MPMX19_05444 are separated by 27 nucleotides
MPMX19_05441: MPMX19_05441 - RNA polymerase sigma factor RpoH, at 130,356 to 131,246
_05441
MPMX19_05442: MPMX19_05442 - Ribosomal large subunit pseudouridine synthase D, at 131,408 to 132,466
_05442
MPMX19_05443: MPMX19_05443 - hypothetical protein, at 132,519 to 132,836
_05443
MPMX19_05444: MPMX19_05444 - Low specificity L-threonine aldolase, at 132,864 to 133,886
_05444
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.379 kb on - strand at 131.379 kb on - strand at 131.379 kb on - strand at 131.402 kb on - strand at 131.410 kb on - strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.432 kb on + strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.433 kb on - strand at 131.443 kb on + strand at 131.444 kb on - strand at 131.617 kb on - strand, within MPMX19_05442 at 131.743 kb on - strand, within MPMX19_05442 at 131.845 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.871 kb on + strand, within MPMX19_05442 at 131.872 kb on - strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.132 kb on + strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.133 kb on - strand, within MPMX19_05442 at 132.369 kb on + strand at 132.370 kb on - strand at 132.370 kb on - strand at 132.455 kb on - strand at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.597 kb on + strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.598 kb on - strand, within MPMX19_05443 at 132.780 kb on + strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.781 kb on - strand, within MPMX19_05443 at 132.954 kb on + strand at 132.954 kb on + strand at 132.954 kb on + strand at 132.955 kb on - strand at 133.086 kb on + strand, within MPMX19_05444 at 133.086 kb on + strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.313 kb on + strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 131,379 - +0.6 131,379 - +1.7 131,379 - -1.3 131,402 - -0.8 131,410 - -1.1 131,432 + -0.5 131,432 + -1.3 131,432 + +0.1 131,432 + -0.9 131,433 - +0.9 131,433 - +0.3 131,433 - -1.8 131,433 - -0.1 131,433 - +0.1 131,433 - -0.4 131,433 - -1.0 131,433 - -2.0 131,433 - +1.5 131,433 - -2.6 131,433 - -1.1 131,443 + -1.6 131,444 - +0.7 131,617 - MPMX19_05442 0.20 +1.0 131,743 - MPMX19_05442 0.32 -0.3 131,845 + MPMX19_05442 0.41 -0.9 131,871 + MPMX19_05442 0.44 +0.5 131,871 + MPMX19_05442 0.44 -1.9 131,871 + MPMX19_05442 0.44 -1.5 131,871 + MPMX19_05442 0.44 -0.9 131,871 + MPMX19_05442 0.44 +1.2 131,872 - MPMX19_05442 0.44 +0.1 132,132 + MPMX19_05442 0.68 +1.7 132,132 + MPMX19_05442 0.68 -0.6 132,132 + MPMX19_05442 0.68 -1.9 132,132 + MPMX19_05442 0.68 -0.6 132,133 - MPMX19_05442 0.68 -0.9 132,133 - MPMX19_05442 0.68 +1.7 132,133 - MPMX19_05442 0.68 -1.6 132,133 - MPMX19_05442 0.68 -0.3 132,133 - MPMX19_05442 0.68 -1.1 132,369 + -1.5 132,370 - -0.6 132,370 - -1.1 132,455 - -1.9 132,597 + MPMX19_05443 0.25 +1.2 132,597 + MPMX19_05443 0.25 -0.0 132,597 + MPMX19_05443 0.25 -1.2 132,597 + MPMX19_05443 0.25 -0.2 132,597 + MPMX19_05443 0.25 -0.8 132,597 + MPMX19_05443 0.25 +0.4 132,597 + MPMX19_05443 0.25 -0.7 132,597 + MPMX19_05443 0.25 -2.6 132,597 + MPMX19_05443 0.25 +0.7 132,597 + MPMX19_05443 0.25 -1.3 132,598 - MPMX19_05443 0.25 -0.3 132,598 - MPMX19_05443 0.25 -0.1 132,598 - MPMX19_05443 0.25 +0.1 132,598 - MPMX19_05443 0.25 -0.6 132,598 - MPMX19_05443 0.25 +0.2 132,598 - MPMX19_05443 0.25 +1.1 132,598 - MPMX19_05443 0.25 -0.5 132,598 - MPMX19_05443 0.25 -1.2 132,598 - MPMX19_05443 0.25 -0.4 132,598 - MPMX19_05443 0.25 -1.6 132,598 - MPMX19_05443 0.25 -1.8 132,780 + MPMX19_05443 0.82 +0.1 132,781 - MPMX19_05443 0.82 -0.9 132,781 - MPMX19_05443 0.82 +0.8 132,781 - MPMX19_05443 0.82 +0.7 132,781 - MPMX19_05443 0.82 -1.3 132,954 + +0.2 132,954 + +1.3 132,954 + +2.1 132,955 - -1.3 133,086 + MPMX19_05444 0.22 -0.9 133,086 + MPMX19_05444 0.22 -0.6 133,087 - MPMX19_05444 0.22 +0.1 133,087 - MPMX19_05444 0.22 -0.0 133,311 + MPMX19_05444 0.44 -0.9 133,311 + MPMX19_05444 0.44 -1.8 133,311 + MPMX19_05444 0.44 -0.9 133,311 + MPMX19_05444 0.44 -1.1 133,311 + MPMX19_05444 0.44 -0.7 133,311 + MPMX19_05444 0.44 +0.1 133,311 + MPMX19_05444 0.44 -0.8 133,311 + MPMX19_05444 0.44 -1.1 133,311 + MPMX19_05444 0.44 +0.4 133,311 + MPMX19_05444 0.44 -1.5 133,311 + MPMX19_05444 0.44 +1.1 133,311 + MPMX19_05444 0.44 +0.4 133,311 + MPMX19_05444 0.44 -0.4 133,312 - MPMX19_05444 0.44 -1.5 133,312 - MPMX19_05444 0.44 -0.3 133,312 - MPMX19_05444 0.44 +0.4 133,312 - MPMX19_05444 0.44 +1.0 133,312 - MPMX19_05444 0.44 -0.6 133,312 - MPMX19_05444 0.44 -0.2 133,312 - MPMX19_05444 0.44 -1.4 133,312 - MPMX19_05444 0.44 +0.1 133,312 - MPMX19_05444 0.44 -0.5 133,312 - MPMX19_05444 0.44 -1.4 133,312 - MPMX19_05444 0.44 -1.6 133,312 - MPMX19_05444 0.44 -1.8 133,312 - MPMX19_05444 0.44 -1.2 133,312 - MPMX19_05444 0.44 +0.9 133,313 + MPMX19_05444 0.44 -0.6 133,314 - MPMX19_05444 0.44 +0.2 133,314 - MPMX19_05444 0.44 -0.3 133,373 + MPMX19_05444 0.50 +0.4 133,373 + MPMX19_05444 0.50 -1.7 133,373 + MPMX19_05444 0.50 +0.7 133,373 + MPMX19_05444 0.50 -1.5 133,373 + MPMX19_05444 0.50 -0.9 133,373 + MPMX19_05444 0.50 +0.7 133,373 + MPMX19_05444 0.50 +1.6 133,373 + MPMX19_05444 0.50 -1.9 133,373 + MPMX19_05444 0.50 -0.4 133,373 + MPMX19_05444 0.50 -0.2 133,373 + MPMX19_05444 0.50 +1.7 133,374 - MPMX19_05444 0.50 +0.7 133,374 - MPMX19_05444 0.50 +0.4 133,374 - MPMX19_05444 0.50 -1.6 133,374 - MPMX19_05444 0.50 -0.4 133,374 - MPMX19_05444 0.50 -0.8 133,374 - MPMX19_05444 0.50 -1.8 133,374 - MPMX19_05444 0.50 -1.8 133,374 - MPMX19_05444 0.50 -1.2 133,374 - MPMX19_05444 0.50 +1.7
Or see this region's nucleotide sequence