Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05191 and MPMX19_05192 are separated by 43 nucleotides MPMX19_05192 and MPMX19_05193 are separated by 405 nucleotides
MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504
_05191
MPMX19_05192: MPMX19_05192 - hypothetical protein, at 695,548 to 695,757
_05192
MPMX19_05193: MPMX19_05193 - Taurine-binding periplasmic protein, at 696,163 to 697,179
_05193
Position (kb) 695
696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.772 kb on + strand, within MPMX19_05191 at 695.084 kb on - strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.313 kb on + strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.375 kb on - strand at 695.375 kb on - strand at 695.377 kb on + strand at 695.377 kb on + strand at 695.378 kb on - strand at 695.378 kb on - strand at 695.392 kb on + strand at 695.392 kb on + strand at 695.392 kb on + strand at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.770 kb on + strand at 695.770 kb on + strand at 695.770 kb on + strand at 695.770 kb on + strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.834 kb on + strand at 695.835 kb on - strand at 696.093 kb on + strand at 696.094 kb on - strand at 696.094 kb on - strand at 696.592 kb on + strand, within MPMX19_05193 at 696.592 kb on + strand, within MPMX19_05193
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 694,686 - MPMX19_05191 0.39 -1.8 694,686 - MPMX19_05191 0.39 +0.7 694,686 - MPMX19_05191 0.39 -0.5 694,762 + MPMX19_05191 0.44 +0.9 694,762 + MPMX19_05191 0.44 -2.2 694,765 + MPMX19_05191 0.45 -1.9 694,765 + MPMX19_05191 0.45 -1.5 694,765 + MPMX19_05191 0.45 -1.2 694,771 + MPMX19_05191 0.45 +0.1 694,771 + MPMX19_05191 0.45 -1.0 694,771 + MPMX19_05191 0.45 -0.3 694,772 + MPMX19_05191 0.45 -0.4 695,084 - MPMX19_05191 0.68 -1.5 695,212 + MPMX19_05191 0.78 -0.6 695,212 + MPMX19_05191 0.78 -0.1 695,212 + MPMX19_05191 0.78 -0.7 695,212 + MPMX19_05191 0.78 +1.7 695,212 + MPMX19_05191 0.78 -0.7 695,212 + MPMX19_05191 0.78 +1.0 695,213 - MPMX19_05191 0.78 +2.1 695,213 - MPMX19_05191 0.78 +0.7 695,213 - MPMX19_05191 0.78 -1.6 695,313 + MPMX19_05191 0.86 +1.2 695,314 - MPMX19_05191 0.86 -1.1 695,314 - MPMX19_05191 0.86 +0.5 695,314 - MPMX19_05191 0.86 +0.1 695,314 - MPMX19_05191 0.86 +0.7 695,375 - +0.1 695,375 - +1.2 695,377 + -0.9 695,377 + +0.2 695,378 - -0.2 695,378 - -0.4 695,392 + +0.5 695,392 + +0.0 695,392 + +0.9 695,664 + MPMX19_05192 0.55 -0.7 695,664 + MPMX19_05192 0.55 -0.9 695,664 + MPMX19_05192 0.55 -1.3 695,664 + MPMX19_05192 0.55 -1.3 695,664 + MPMX19_05192 0.55 -0.8 695,664 + MPMX19_05192 0.55 -0.7 695,664 + MPMX19_05192 0.55 -1.7 695,664 + MPMX19_05192 0.55 +1.5 695,665 - MPMX19_05192 0.56 -1.5 695,665 - MPMX19_05192 0.56 +0.1 695,665 - MPMX19_05192 0.56 -1.9 695,665 - MPMX19_05192 0.56 -0.9 695,665 - MPMX19_05192 0.56 -0.3 695,665 - MPMX19_05192 0.56 -1.3 695,665 - MPMX19_05192 0.56 -0.9 695,665 - MPMX19_05192 0.56 -1.3 695,665 - MPMX19_05192 0.56 -2.4 695,665 - MPMX19_05192 0.56 -0.7 695,665 - MPMX19_05192 0.56 -0.8 695,770 + -0.3 695,770 + -0.5 695,770 + -0.3 695,770 + -0.2 695,771 - +1.0 695,771 - -1.4 695,771 - -1.6 695,771 - -1.3 695,771 - -2.0 695,771 - -1.0 695,771 - +1.1 695,834 + +1.5 695,835 - -0.4 696,093 + -1.9 696,094 - +0.2 696,094 - -0.3 696,592 + MPMX19_05193 0.42 +0.5 696,592 + MPMX19_05193 0.42 +0.6
Or see this region's nucleotide sequence