Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04729 and MPMX19_04730 are separated by 140 nucleotides MPMX19_04730 and MPMX19_04731 are separated by 10 nucleotides MPMX19_04731 and MPMX19_04732 overlap by 8 nucleotides MPMX19_04732 and MPMX19_04733 are separated by 100 nucleotides
MPMX19_04729: MPMX19_04729 - hypothetical protein, at 120,784 to 121,857
_04729
MPMX19_04730: MPMX19_04730 - Transcription elongation factor GreB, at 121,998 to 122,570
_04730
MPMX19_04731: MPMX19_04731 - hypothetical protein, at 122,581 to 123,630
_04731
MPMX19_04732: MPMX19_04732 - hypothetical protein, at 123,623 to 124,513
_04732
MPMX19_04733: MPMX19_04733 - hypothetical protein, at 124,614 to 125,357
_04733
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 121.658 kb on + strand, within MPMX19_04729 at 121.664 kb on + strand, within MPMX19_04729 at 121.665 kb on - strand, within MPMX19_04729 at 121.665 kb on - strand, within MPMX19_04729 at 121.694 kb on + strand, within MPMX19_04729 at 121.695 kb on - strand, within MPMX19_04729 at 121.695 kb on - strand, within MPMX19_04729 at 122.061 kb on - strand, within MPMX19_04730 at 122.061 kb on - strand, within MPMX19_04730 at 122.082 kb on + strand, within MPMX19_04730 at 122.082 kb on + strand, within MPMX19_04730 at 122.083 kb on - strand, within MPMX19_04730 at 122.083 kb on - strand, within MPMX19_04730 at 122.083 kb on - strand, within MPMX19_04730 at 122.121 kb on + strand, within MPMX19_04730 at 122.122 kb on - strand, within MPMX19_04730 at 122.129 kb on - strand, within MPMX19_04730 at 122.129 kb on - strand, within MPMX19_04730 at 122.855 kb on + strand, within MPMX19_04731 at 122.856 kb on - strand, within MPMX19_04731 at 122.979 kb on - strand, within MPMX19_04731 at 122.979 kb on - strand, within MPMX19_04731 at 123.002 kb on + strand, within MPMX19_04731 at 123.002 kb on + strand, within MPMX19_04731 at 123.003 kb on - strand, within MPMX19_04731 at 123.003 kb on - strand, within MPMX19_04731 at 123.086 kb on + strand, within MPMX19_04731 at 123.086 kb on + strand, within MPMX19_04731 at 123.086 kb on + strand, within MPMX19_04731 at 123.086 kb on + strand, within MPMX19_04731 at 123.087 kb on - strand, within MPMX19_04731 at 123.087 kb on - strand, within MPMX19_04731 at 123.087 kb on - strand, within MPMX19_04731 at 123.087 kb on - strand, within MPMX19_04731 at 123.087 kb on - strand, within MPMX19_04731 at 123.314 kb on + strand, within MPMX19_04731 at 123.315 kb on - strand, within MPMX19_04731 at 123.315 kb on - strand, within MPMX19_04731 at 123.315 kb on - strand, within MPMX19_04731 at 123.726 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.816 kb on + strand, within MPMX19_04732 at 123.817 kb on - strand, within MPMX19_04732 at 123.817 kb on - strand, within MPMX19_04732 at 123.817 kb on - strand, within MPMX19_04732 at 124.578 kb on + strand at 124.578 kb on + strand at 124.578 kb on + strand at 124.578 kb on + strand at 124.578 kb on + strand at 124.578 kb on + strand at 124.579 kb on - strand at 124.579 kb on - strand at 124.579 kb on - strand at 124.579 kb on - strand at 124.579 kb on - strand at 124.579 kb on - strand at 124.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 121,658 + MPMX19_04729 0.81 +0.1 121,664 + MPMX19_04729 0.82 +0.2 121,665 - MPMX19_04729 0.82 -1.3 121,665 - MPMX19_04729 0.82 -0.5 121,694 + MPMX19_04729 0.85 -0.7 121,695 - MPMX19_04729 0.85 +0.0 121,695 - MPMX19_04729 0.85 +0.5 122,061 - MPMX19_04730 0.11 +1.0 122,061 - MPMX19_04730 0.11 -0.3 122,082 + MPMX19_04730 0.15 +0.2 122,082 + MPMX19_04730 0.15 -1.5 122,083 - MPMX19_04730 0.15 -0.0 122,083 - MPMX19_04730 0.15 -0.6 122,083 - MPMX19_04730 0.15 -1.0 122,121 + MPMX19_04730 0.21 -2.4 122,122 - MPMX19_04730 0.22 -0.6 122,129 - MPMX19_04730 0.23 -1.3 122,129 - MPMX19_04730 0.23 -0.3 122,855 + MPMX19_04731 0.26 -0.5 122,856 - MPMX19_04731 0.26 -0.5 122,979 - MPMX19_04731 0.38 -0.8 122,979 - MPMX19_04731 0.38 +0.4 123,002 + MPMX19_04731 0.40 -0.9 123,002 + MPMX19_04731 0.40 +0.9 123,003 - MPMX19_04731 0.40 -0.8 123,003 - MPMX19_04731 0.40 -0.1 123,086 + MPMX19_04731 0.48 -1.3 123,086 + MPMX19_04731 0.48 -0.7 123,086 + MPMX19_04731 0.48 -0.8 123,086 + MPMX19_04731 0.48 -2.0 123,087 - MPMX19_04731 0.48 -2.5 123,087 - MPMX19_04731 0.48 -1.1 123,087 - MPMX19_04731 0.48 -0.0 123,087 - MPMX19_04731 0.48 -2.1 123,087 - MPMX19_04731 0.48 -0.1 123,314 + MPMX19_04731 0.70 +1.0 123,315 - MPMX19_04731 0.70 -1.5 123,315 - MPMX19_04731 0.70 -0.1 123,315 - MPMX19_04731 0.70 +1.2 123,726 + MPMX19_04732 0.12 -1.2 123,816 + MPMX19_04732 0.22 +0.5 123,816 + MPMX19_04732 0.22 -1.7 123,816 + MPMX19_04732 0.22 -0.5 123,816 + MPMX19_04732 0.22 -0.1 123,816 + MPMX19_04732 0.22 +0.5 123,816 + MPMX19_04732 0.22 -1.8 123,817 - MPMX19_04732 0.22 -1.2 123,817 - MPMX19_04732 0.22 -1.5 123,817 - MPMX19_04732 0.22 +0.0 124,578 + -0.3 124,578 + -1.1 124,578 + -0.9 124,578 + -2.9 124,578 + -1.0 124,578 + -1.1 124,579 - -0.7 124,579 - -0.8 124,579 - -0.2 124,579 - -0.7 124,579 - -0.1 124,579 - +0.5 124,579 - -1.7
Or see this region's nucleotide sequence