Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04550 and MPMX19_04551 are separated by 13 nucleotides MPMX19_04551 and MPMX19_04552 are separated by 62 nucleotides MPMX19_04552 and MPMX19_04553 are separated by 47 nucleotides MPMX19_04553 and MPMX19_04554 are separated by 229 nucleotides
MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771
_04550
MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474
_04551
MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961
_04552
MPMX19_04553: MPMX19_04553 - hypothetical protein, at 930,009 to 930,425
_04553
MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371
_04554
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.674 kb on - strand, within MPMX19_04550 at 927.740 kb on - strand at 928.017 kb on - strand, within MPMX19_04551 at 928.193 kb on + strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.463 kb on + strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.472 kb on + strand at 928.473 kb on - strand at 928.473 kb on - strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.867 kb on + strand, within MPMX19_04552 at 928.867 kb on + strand, within MPMX19_04552 at 928.868 kb on - strand, within MPMX19_04552 at 928.868 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.982 kb on - strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.162 kb on - strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.504 kb on - strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.741 kb on - strand, within MPMX19_04552 at 929.741 kb on - strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.806 kb on + strand, within MPMX19_04552 at 930.238 kb on - strand, within MPMX19_04553 at 930.238 kb on - strand, within MPMX19_04553 at 930.276 kb on + strand, within MPMX19_04553 at 930.276 kb on + strand, within MPMX19_04553 at 930.277 kb on - strand, within MPMX19_04553 at 930.563 kb on + strand at 930.563 kb on + strand at 930.564 kb on - strand at 930.564 kb on - strand at 930.564 kb on - strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.657 kb on - strand at 930.657 kb on - strand at 930.657 kb on - strand at 930.701 kb on + strand at 930.701 kb on + strand at 930.701 kb on + strand at 930.702 kb on - strand at 930.702 kb on - strand at 930.702 kb on - strand at 930.766 kb on + strand, within MPMX19_04554 at 930.766 kb on + strand, within MPMX19_04554 at 930.766 kb on + strand, within MPMX19_04554 at 930.767 kb on - strand, within MPMX19_04554 at 930.767 kb on - strand, within MPMX19_04554 at 930.860 kb on + strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.932 kb on - strand, within MPMX19_04554
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 927,670 + MPMX19_04550 0.85 +0.7 927,670 + MPMX19_04550 0.85 +0.2 927,670 + MPMX19_04550 0.85 -1.6 927,670 + MPMX19_04550 0.85 -1.3 927,670 + MPMX19_04550 0.85 +0.1 927,670 + MPMX19_04550 0.85 +1.0 927,670 + MPMX19_04550 0.85 +1.0 927,670 + MPMX19_04550 0.85 -0.1 927,670 + MPMX19_04550 0.85 -1.1 927,671 - MPMX19_04550 0.85 -0.7 927,671 - MPMX19_04550 0.85 -1.3 927,671 - MPMX19_04550 0.85 -0.7 927,671 - MPMX19_04550 0.85 +0.1 927,673 + MPMX19_04550 0.86 +0.1 927,673 + MPMX19_04550 0.86 +0.8 927,673 + MPMX19_04550 0.86 +0.7 927,673 + MPMX19_04550 0.86 +1.6 927,673 + MPMX19_04550 0.86 -2.5 927,673 + MPMX19_04550 0.86 -0.7 927,673 + MPMX19_04550 0.86 +0.1 927,673 + MPMX19_04550 0.86 -0.7 927,673 + MPMX19_04550 0.86 -0.2 927,673 + MPMX19_04550 0.86 -0.3 927,673 + MPMX19_04550 0.86 -0.7 927,673 + MPMX19_04550 0.86 -0.1 927,674 - MPMX19_04550 0.86 -0.3 927,740 - +0.1 928,017 - MPMX19_04551 0.34 -0.1 928,193 + MPMX19_04551 0.59 -0.9 928,194 - MPMX19_04551 0.59 +0.7 928,194 - MPMX19_04551 0.59 +0.1 928,463 + -1.5 928,464 - -0.7 928,464 - -0.5 928,464 - -1.2 928,472 + -0.0 928,473 - -1.6 928,473 - -2.1 928,556 + -2.4 928,556 + -0.7 928,556 + -1.4 928,556 + +0.9 928,867 + MPMX19_04552 0.23 -1.8 928,867 + MPMX19_04552 0.23 -1.1 928,868 - MPMX19_04552 0.23 -2.0 928,868 - MPMX19_04552 0.23 +0.3 928,904 - MPMX19_04552 0.26 -0.8 928,904 - MPMX19_04552 0.26 -1.1 928,904 - MPMX19_04552 0.26 -0.8 928,981 + MPMX19_04552 0.31 -1.2 928,981 + MPMX19_04552 0.31 -0.7 928,981 + MPMX19_04552 0.31 -0.1 928,982 - MPMX19_04552 0.31 -0.3 928,999 + MPMX19_04552 0.32 +0.1 928,999 + MPMX19_04552 0.32 +0.7 928,999 + MPMX19_04552 0.32 -1.9 928,999 + MPMX19_04552 0.32 -1.3 928,999 + MPMX19_04552 0.32 +1.3 928,999 + MPMX19_04552 0.32 -2.1 928,999 + MPMX19_04552 0.32 -1.0 928,999 + MPMX19_04552 0.32 -0.9 928,999 + MPMX19_04552 0.32 +0.7 928,999 + MPMX19_04552 0.32 -0.8 928,999 + MPMX19_04552 0.32 +3.0 928,999 + MPMX19_04552 0.32 +1.0 929,000 - MPMX19_04552 0.32 -1.5 929,000 - MPMX19_04552 0.32 +1.1 929,000 - MPMX19_04552 0.32 -0.3 929,000 - MPMX19_04552 0.32 -1.7 929,000 - MPMX19_04552 0.32 -1.5 929,000 - MPMX19_04552 0.32 -0.1 929,000 - MPMX19_04552 0.32 -0.1 929,000 - MPMX19_04552 0.32 -1.8 929,000 - MPMX19_04552 0.32 -0.9 929,000 - MPMX19_04552 0.32 +0.8 929,000 - MPMX19_04552 0.32 -1.1 929,000 - MPMX19_04552 0.32 +0.4 929,008 + MPMX19_04552 0.33 -0.5 929,008 + MPMX19_04552 0.33 -1.5 929,008 + MPMX19_04552 0.33 -1.0 929,008 + MPMX19_04552 0.33 -0.1 929,009 - MPMX19_04552 0.33 -0.3 929,009 - MPMX19_04552 0.33 -0.7 929,009 - MPMX19_04552 0.33 -0.2 929,009 - MPMX19_04552 0.33 +0.7 929,009 - MPMX19_04552 0.33 +0.6 929,162 - MPMX19_04552 0.44 -1.5 929,320 + MPMX19_04552 0.55 -2.0 929,320 + MPMX19_04552 0.55 -0.9 929,320 + MPMX19_04552 0.55 -0.1 929,320 + MPMX19_04552 0.55 -0.4 929,320 + MPMX19_04552 0.55 +0.8 929,321 - MPMX19_04552 0.55 -0.3 929,321 - MPMX19_04552 0.55 +1.7 929,321 - MPMX19_04552 0.55 -1.4 929,341 + MPMX19_04552 0.56 -1.4 929,341 + MPMX19_04552 0.56 -0.6 929,341 + MPMX19_04552 0.56 +0.3 929,341 + MPMX19_04552 0.56 +0.3 929,341 + MPMX19_04552 0.56 -0.8 929,341 + MPMX19_04552 0.56 +1.1 929,341 + MPMX19_04552 0.56 -1.0 929,341 + MPMX19_04552 0.56 -1.8 929,341 + MPMX19_04552 0.56 +0.1 929,341 + MPMX19_04552 0.56 -2.5 929,341 + MPMX19_04552 0.56 +0.2 929,341 + MPMX19_04552 0.56 -0.2 929,341 + MPMX19_04552 0.56 -2.0 929,341 + MPMX19_04552 0.56 -1.1 929,341 + MPMX19_04552 0.56 -1.4 929,341 + MPMX19_04552 0.56 -0.4 929,342 - MPMX19_04552 0.56 +0.4 929,342 - MPMX19_04552 0.56 -1.3 929,342 - MPMX19_04552 0.56 -0.3 929,342 - MPMX19_04552 0.56 -2.1 929,342 - MPMX19_04552 0.56 -2.1 929,342 - MPMX19_04552 0.56 -0.5 929,342 - MPMX19_04552 0.56 -0.3 929,342 - MPMX19_04552 0.56 +0.4 929,342 - MPMX19_04552 0.56 +1.3 929,342 - MPMX19_04552 0.56 -0.7 929,342 - MPMX19_04552 0.56 +0.2 929,342 - MPMX19_04552 0.56 -0.5 929,342 - MPMX19_04552 0.56 -1.9 929,342 - MPMX19_04552 0.56 -0.7 929,342 - MPMX19_04552 0.56 +0.7 929,342 - MPMX19_04552 0.56 -1.3 929,342 - MPMX19_04552 0.56 +0.2 929,342 - MPMX19_04552 0.56 -0.1 929,342 - MPMX19_04552 0.56 +0.1 929,504 - MPMX19_04552 0.68 -0.3 929,680 + MPMX19_04552 0.80 +0.5 929,680 + MPMX19_04552 0.80 -0.3 929,680 + MPMX19_04552 0.80 -1.0 929,680 + MPMX19_04552 0.80 -0.6 929,680 + MPMX19_04552 0.80 +0.4 929,681 - MPMX19_04552 0.80 -0.8 929,681 - MPMX19_04552 0.80 -0.5 929,681 - MPMX19_04552 0.80 -2.5 929,681 - MPMX19_04552 0.80 -1.8 929,681 - MPMX19_04552 0.80 -1.0 929,681 - MPMX19_04552 0.80 -0.7 929,681 - MPMX19_04552 0.80 +0.4 929,681 - MPMX19_04552 0.80 -0.7 929,740 + MPMX19_04552 0.84 +0.5 929,740 + MPMX19_04552 0.84 -1.5 929,740 + MPMX19_04552 0.84 -1.4 929,740 + MPMX19_04552 0.84 -0.3 929,740 + MPMX19_04552 0.84 +0.1 929,741 - MPMX19_04552 0.84 +0.1 929,741 - MPMX19_04552 0.84 -1.7 929,797 + MPMX19_04552 0.88 -1.1 929,797 + MPMX19_04552 0.88 +0.5 929,797 + MPMX19_04552 0.88 +1.2 929,797 + MPMX19_04552 0.88 +0.7 929,798 - MPMX19_04552 0.88 -1.5 929,798 - MPMX19_04552 0.88 -0.1 929,798 - MPMX19_04552 0.88 -2.1 929,798 - MPMX19_04552 0.88 -1.6 929,806 + MPMX19_04552 0.89 +0.9 930,238 - MPMX19_04553 0.55 -0.9 930,238 - MPMX19_04553 0.55 +0.3 930,276 + MPMX19_04553 0.64 -1.7 930,276 + MPMX19_04553 0.64 -0.1 930,277 - MPMX19_04553 0.64 -0.4 930,563 + -1.5 930,563 + -1.0 930,564 - +0.5 930,564 - -0.0 930,564 - +0.2 930,656 + -0.9 930,656 + +0.1 930,656 + -0.8 930,656 + -0.1 930,656 + +0.3 930,657 - -0.3 930,657 - -0.4 930,657 - -1.0 930,701 + -1.8 930,701 + -0.0 930,701 + +0.2 930,702 - -1.3 930,702 - +0.1 930,702 - -0.0 930,766 + MPMX19_04554 0.15 -0.1 930,766 + MPMX19_04554 0.15 +0.1 930,766 + MPMX19_04554 0.15 -0.2 930,767 - MPMX19_04554 0.16 -1.3 930,767 - MPMX19_04554 0.16 +0.7 930,860 + MPMX19_04554 0.29 -1.1 930,861 - MPMX19_04554 0.29 -0.3 930,861 - MPMX19_04554 0.29 -1.8 930,861 - MPMX19_04554 0.29 -0.1 930,861 - MPMX19_04554 0.29 -3.0 930,932 - MPMX19_04554 0.39 -1.7
Or see this region's nucleotide sequence