Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04437 and MPMX19_04438 are separated by 43 nucleotides MPMX19_04438 and MPMX19_04439 are separated by 293 nucleotides
MPMX19_04437: MPMX19_04437 - Oxalyl-CoA decarboxylase, at 802,613 to 804,376
_04437
MPMX19_04438: MPMX19_04438 - hypothetical protein, at 804,420 to 805,109
_04438
MPMX19_04439: MPMX19_04439 - Pca regulon regulatory protein, at 805,403 to 806,236
_04439
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.740 kb on - strand, within MPMX19_04437 at 803.740 kb on - strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 804.229 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.349 kb on + strand at 804.349 kb on + strand at 804.349 kb on + strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.694 kb on + strand, within MPMX19_04438 at 804.694 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.007 kb on - strand, within MPMX19_04438 at 805.007 kb on - strand, within MPMX19_04438 at 805.045 kb on + strand at 805.046 kb on + strand at 805.046 kb on - strand at 805.046 kb on - strand at 805.046 kb on - strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.207 kb on - strand at 805.207 kb on - strand at 805.245 kb on + strand at 805.312 kb on + strand at 805.312 kb on + strand at 805.313 kb on - strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.386 kb on - strand at 805.386 kb on - strand at 805.386 kb on - strand at 805.628 kb on + strand, within MPMX19_04439 at 805.628 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.805 kb on - strand, within MPMX19_04439 at 805.805 kb on - strand, within MPMX19_04439 at 805.871 kb on + strand, within MPMX19_04439 at 805.871 kb on + strand, within MPMX19_04439 at 805.872 kb on - strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.932 kb on - strand, within MPMX19_04439 at 805.932 kb on - strand, within MPMX19_04439
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 803,652 + MPMX19_04437 0.59 +0.1 803,652 + MPMX19_04437 0.59 +0.4 803,652 + MPMX19_04437 0.59 -1.1 803,652 + MPMX19_04437 0.59 +0.2 803,653 - MPMX19_04437 0.59 -0.4 803,653 - MPMX19_04437 0.59 +0.4 803,653 - MPMX19_04437 0.59 -0.9 803,653 - MPMX19_04437 0.59 -1.2 803,740 - MPMX19_04437 0.64 +0.1 803,740 - MPMX19_04437 0.64 -0.2 803,835 + MPMX19_04437 0.69 -1.7 803,835 + MPMX19_04437 0.69 -3.2 803,835 + MPMX19_04437 0.69 -1.7 803,835 + MPMX19_04437 0.69 -0.4 803,836 - MPMX19_04437 0.69 -0.3 803,836 - MPMX19_04437 0.69 -1.1 803,836 - MPMX19_04437 0.69 +2.0 803,836 - MPMX19_04437 0.69 -0.7 803,836 - MPMX19_04437 0.69 -0.5 803,836 - MPMX19_04437 0.69 +0.9 803,970 + MPMX19_04437 0.77 -1.2 803,970 + MPMX19_04437 0.77 +0.6 803,970 + MPMX19_04437 0.77 -1.4 803,971 - MPMX19_04437 0.77 -1.8 803,971 - MPMX19_04437 0.77 -1.5 803,971 - MPMX19_04437 0.77 -0.7 804,229 + -0.5 804,243 + -2.5 804,243 + +0.7 804,243 + -2.7 804,243 + -0.3 804,243 + -0.8 804,243 + -0.7 804,243 + -1.8 804,243 + -0.8 804,243 + -1.0 804,243 + +0.3 804,243 + +0.5 804,243 + +0.7 804,243 + -0.3 804,243 + -1.0 804,243 + -0.3 804,243 + -1.5 804,243 + -1.5 804,243 + -1.0 804,244 - +0.5 804,244 - -1.5 804,244 - +0.8 804,244 - -1.3 804,244 - -0.7 804,244 - -0.2 804,244 - -0.5 804,244 - -0.7 804,244 - +1.7 804,244 - -2.1 804,244 - -0.3 804,244 - -0.1 804,244 - +0.1 804,349 + -1.0 804,349 + +0.4 804,349 + -0.9 804,350 - +0.3 804,350 - -0.3 804,350 - -0.0 804,350 - +0.1 804,350 - -0.7 804,350 - +0.9 804,370 + -0.9 804,370 + -1.5 804,370 + -0.7 804,370 + -2.0 804,370 + +0.9 804,371 - +0.9 804,371 - -1.5 804,371 - +0.0 804,371 - -0.6 804,371 - -0.1 804,376 + +0.3 804,376 + +1.7 804,376 + -0.4 804,376 + +0.4 804,376 + -1.3 804,376 + +1.1 804,376 + -0.5 804,376 + +0.1 804,376 + +1.1 804,376 + -0.6 804,376 + -0.7 804,376 + -1.5 804,376 + -0.2 804,376 + +0.1 804,376 + -1.7 804,376 + +0.5 804,376 + -0.9 804,376 + -0.3 804,376 + -0.9 804,377 - -0.0 804,377 - -0.9 804,377 - -0.3 804,377 - -0.8 804,377 - +1.1 804,377 - -0.8 804,377 - +0.7 804,377 - -1.0 804,377 - -0.5 804,377 - -0.9 804,377 - +0.3 804,377 - +1.3 804,377 - -0.9 804,377 - -0.1 804,377 - -0.9 804,377 - +1.7 804,377 - +1.2 804,377 - -1.5 804,377 - -0.1 804,377 - -1.1 804,377 - +1.6 804,377 - -0.1 804,377 - -0.4 804,377 - -0.3 804,451 + +0.1 804,451 + -0.1 804,451 + -0.4 804,451 + -2.1 804,451 + -0.5 804,452 - +0.4 804,452 - +0.0 804,452 - -2.6 804,452 - -1.5 804,452 - -1.2 804,452 - -0.5 804,452 - +1.0 804,452 - -1.5 804,602 + MPMX19_04438 0.26 -2.3 804,602 + MPMX19_04438 0.26 +0.7 804,602 + MPMX19_04438 0.26 -1.3 804,602 + MPMX19_04438 0.26 -0.1 804,602 + MPMX19_04438 0.26 -1.3 804,602 + MPMX19_04438 0.26 -0.5 804,602 + MPMX19_04438 0.26 +0.3 804,603 - MPMX19_04438 0.27 -0.0 804,603 - MPMX19_04438 0.27 +0.7 804,603 - MPMX19_04438 0.27 +1.2 804,603 - MPMX19_04438 0.27 -1.1 804,603 - MPMX19_04438 0.27 +1.3 804,603 - MPMX19_04438 0.27 +1.0 804,603 - MPMX19_04438 0.27 +0.9 804,603 - MPMX19_04438 0.27 +0.1 804,603 - MPMX19_04438 0.27 -0.2 804,694 + MPMX19_04438 0.40 +0.7 804,694 + MPMX19_04438 0.40 +1.1 804,728 + MPMX19_04438 0.45 -0.1 804,728 + MPMX19_04438 0.45 -0.5 804,728 + MPMX19_04438 0.45 -0.7 804,729 - MPMX19_04438 0.45 -0.2 804,729 - MPMX19_04438 0.45 -1.4 804,729 - MPMX19_04438 0.45 -2.3 804,729 - MPMX19_04438 0.45 -0.7 804,729 - MPMX19_04438 0.45 -0.8 804,729 - MPMX19_04438 0.45 +0.9 804,729 - MPMX19_04438 0.45 +0.1 804,729 - MPMX19_04438 0.45 +0.5 804,729 - MPMX19_04438 0.45 -1.7 804,729 - MPMX19_04438 0.45 -0.1 804,730 + MPMX19_04438 0.45 +0.7 804,730 + MPMX19_04438 0.45 +0.3 804,730 + MPMX19_04438 0.45 +2.3 804,730 + MPMX19_04438 0.45 +0.4 804,730 + MPMX19_04438 0.45 +0.2 804,731 - MPMX19_04438 0.45 -1.1 804,731 - MPMX19_04438 0.45 +0.4 804,731 - MPMX19_04438 0.45 +1.1 804,731 - MPMX19_04438 0.45 -1.0 804,731 - MPMX19_04438 0.45 -1.9 804,731 - MPMX19_04438 0.45 -2.7 805,006 + MPMX19_04438 0.85 -0.3 805,006 + MPMX19_04438 0.85 +2.1 805,006 + MPMX19_04438 0.85 +0.7 805,006 + MPMX19_04438 0.85 +0.1 805,006 + MPMX19_04438 0.85 -1.3 805,006 + MPMX19_04438 0.85 -0.7 805,006 + MPMX19_04438 0.85 -1.8 805,007 - MPMX19_04438 0.85 +1.2 805,007 - MPMX19_04438 0.85 -0.9 805,045 + +0.5 805,046 + +0.2 805,046 - -0.7 805,046 - +0.1 805,046 - -0.1 805,206 + +1.2 805,206 + -1.7 805,206 + -1.1 805,206 + -0.3 805,207 - -0.7 805,207 - -1.3 805,245 + -1.3 805,312 + -0.7 805,312 + -1.5 805,313 - -2.1 805,385 + -1.3 805,385 + -1.2 805,385 + +2.0 805,385 + +1.3 805,386 - +0.1 805,386 - -1.4 805,386 - -0.7 805,628 + MPMX19_04439 0.27 -1.3 805,628 + MPMX19_04439 0.27 +0.2 805,802 + MPMX19_04439 0.48 +0.1 805,802 + MPMX19_04439 0.48 -0.9 805,802 + MPMX19_04439 0.48 -0.7 805,802 + MPMX19_04439 0.48 -2.0 805,802 + MPMX19_04439 0.48 -0.4 805,802 + MPMX19_04439 0.48 -0.2 805,802 + MPMX19_04439 0.48 -0.1 805,802 + MPMX19_04439 0.48 -0.3 805,802 + MPMX19_04439 0.48 +0.7 805,802 + MPMX19_04439 0.48 -1.7 805,802 + MPMX19_04439 0.48 +0.3 805,802 + MPMX19_04439 0.48 -2.6 805,802 + MPMX19_04439 0.48 +0.6 805,802 + MPMX19_04439 0.48 +0.5 805,802 + MPMX19_04439 0.48 -0.3 805,802 + MPMX19_04439 0.48 -1.0 805,802 + MPMX19_04439 0.48 -0.9 805,803 - MPMX19_04439 0.48 +0.7 805,803 - MPMX19_04439 0.48 +0.7 805,803 - MPMX19_04439 0.48 -1.1 805,803 - MPMX19_04439 0.48 -0.9 805,803 - MPMX19_04439 0.48 -0.9 805,803 - MPMX19_04439 0.48 -1.9 805,803 - MPMX19_04439 0.48 -1.1 805,803 - MPMX19_04439 0.48 +0.2 805,803 - MPMX19_04439 0.48 -0.9 805,803 - MPMX19_04439 0.48 -1.3 805,803 - MPMX19_04439 0.48 +0.7 805,803 - MPMX19_04439 0.48 +0.6 805,803 - MPMX19_04439 0.48 -0.9 805,803 - MPMX19_04439 0.48 -0.3 805,803 - MPMX19_04439 0.48 +1.7 805,803 - MPMX19_04439 0.48 -1.0 805,803 - MPMX19_04439 0.48 -1.0 805,803 - MPMX19_04439 0.48 +0.3 805,804 + MPMX19_04439 0.48 -2.6 805,804 + MPMX19_04439 0.48 +0.1 805,804 + MPMX19_04439 0.48 +0.7 805,805 - MPMX19_04439 0.48 -0.3 805,805 - MPMX19_04439 0.48 -0.9 805,871 + MPMX19_04439 0.56 -0.7 805,871 + MPMX19_04439 0.56 -1.9 805,872 - MPMX19_04439 0.56 +0.6 805,931 + MPMX19_04439 0.63 -1.5 805,931 + MPMX19_04439 0.63 -0.1 805,931 + MPMX19_04439 0.63 -1.3 805,931 + MPMX19_04439 0.63 +3.0 805,932 - MPMX19_04439 0.63 -0.5 805,932 - MPMX19_04439 0.63 +0.3
Or see this region's nucleotide sequence