Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04075 and MPMX19_04076 are separated by 255 nucleotides MPMX19_04076 and MPMX19_04077 are separated by 67 nucleotides
MPMX19_04075: MPMX19_04075 - Aldose 1-epimerase, at 381,281 to 382,366
_04075
MPMX19_04076: MPMX19_04076 - hypothetical protein, at 382,622 to 383,344
_04076
MPMX19_04077: MPMX19_04077 - Adaptive-response sensory-kinase SasA, at 383,412 to 384,773
_04077
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 381.753 kb on + strand, within MPMX19_04075 at 381.910 kb on + strand, within MPMX19_04075 at 381.910 kb on + strand, within MPMX19_04075 at 381.910 kb on + strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.911 kb on - strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.912 kb on + strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.913 kb on - strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.969 kb on + strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 381.970 kb on - strand, within MPMX19_04075 at 382.128 kb on + strand, within MPMX19_04075 at 382.128 kb on + strand, within MPMX19_04075 at 382.129 kb on - strand, within MPMX19_04075 at 382.188 kb on + strand, within MPMX19_04075 at 382.188 kb on + strand, within MPMX19_04075 at 382.188 kb on + strand, within MPMX19_04075 at 382.188 kb on + strand, within MPMX19_04075 at 382.188 kb on + strand, within MPMX19_04075 at 382.189 kb on - strand, within MPMX19_04075 at 382.189 kb on - strand, within MPMX19_04075 at 382.189 kb on - strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.257 kb on + strand, within MPMX19_04075 at 382.258 kb on - strand at 382.258 kb on - strand at 382.258 kb on - strand at 382.258 kb on - strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.338 kb on + strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.339 kb on - strand at 382.392 kb on + strand at 382.392 kb on + strand at 382.393 kb on - strand at 382.490 kb on - strand at 382.490 kb on - strand at 382.566 kb on + strand at 382.566 kb on + strand at 382.566 kb on + strand at 382.566 kb on + strand at 382.566 kb on + strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 382.567 kb on - strand at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.082 kb on + strand, within MPMX19_04076 at 383.083 kb on - strand, within MPMX19_04076 at 383.083 kb on - strand, within MPMX19_04076 at 383.097 kb on + strand, within MPMX19_04076 at 383.097 kb on + strand, within MPMX19_04076 at 383.098 kb on - strand, within MPMX19_04076 at 383.098 kb on - strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on + strand, within MPMX19_04076 at 383.190 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.191 kb on - strand, within MPMX19_04076 at 383.388 kb on + strand at 383.389 kb on - strand at 383.389 kb on - strand at 383.389 kb on - strand at 383.491 kb on + strand at 383.491 kb on + strand at 383.491 kb on + strand at 383.491 kb on + strand at 383.491 kb on + strand at 383.492 kb on - strand at 383.492 kb on - strand at 383.492 kb on - strand at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.897 kb on + strand, within MPMX19_04077 at 383.898 kb on - strand, within MPMX19_04077 at 383.898 kb on - strand, within MPMX19_04077 at 383.898 kb on - strand, within MPMX19_04077 at 383.898 kb on - strand, within MPMX19_04077 at 383.898 kb on - strand, within MPMX19_04077
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 381,753 + MPMX19_04075 0.43 -0.4 381,910 + MPMX19_04075 0.58 -0.9 381,910 + MPMX19_04075 0.58 -1.2 381,910 + MPMX19_04075 0.58 -2.4 381,911 - MPMX19_04075 0.58 -1.2 381,911 - MPMX19_04075 0.58 +0.0 381,911 - MPMX19_04075 0.58 +0.1 381,911 - MPMX19_04075 0.58 +0.3 381,911 - MPMX19_04075 0.58 +0.4 381,911 - MPMX19_04075 0.58 -0.5 381,911 - MPMX19_04075 0.58 -0.8 381,911 - MPMX19_04075 0.58 -1.2 381,912 + MPMX19_04075 0.58 -1.7 381,912 + MPMX19_04075 0.58 -1.2 381,912 + MPMX19_04075 0.58 -1.3 381,912 + MPMX19_04075 0.58 +1.4 381,912 + MPMX19_04075 0.58 +0.3 381,912 + MPMX19_04075 0.58 -0.7 381,913 - MPMX19_04075 0.58 -0.3 381,913 - MPMX19_04075 0.58 +0.2 381,913 - MPMX19_04075 0.58 -0.1 381,913 - MPMX19_04075 0.58 +0.1 381,913 - MPMX19_04075 0.58 -0.8 381,913 - MPMX19_04075 0.58 +0.1 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 -0.1 381,969 + MPMX19_04075 0.63 +0.4 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 +0.5 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 -0.7 381,969 + MPMX19_04075 0.63 +0.5 381,969 + MPMX19_04075 0.63 +0.3 381,969 + MPMX19_04075 0.63 -0.6 381,969 + MPMX19_04075 0.63 -1.7 381,969 + MPMX19_04075 0.63 +0.2 381,969 + MPMX19_04075 0.63 +0.6 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 -0.6 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 +0.6 381,969 + MPMX19_04075 0.63 -0.4 381,969 + MPMX19_04075 0.63 -0.2 381,969 + MPMX19_04075 0.63 -1.0 381,969 + MPMX19_04075 0.63 -1.5 381,970 - MPMX19_04075 0.63 -0.1 381,970 - MPMX19_04075 0.63 +0.9 381,970 - MPMX19_04075 0.63 +0.1 381,970 - MPMX19_04075 0.63 +0.7 381,970 - MPMX19_04075 0.63 -0.5 381,970 - MPMX19_04075 0.63 -1.1 381,970 - MPMX19_04075 0.63 -0.6 381,970 - MPMX19_04075 0.63 -0.3 381,970 - MPMX19_04075 0.63 -0.8 381,970 - MPMX19_04075 0.63 +0.8 381,970 - MPMX19_04075 0.63 +0.2 381,970 - MPMX19_04075 0.63 -0.7 381,970 - MPMX19_04075 0.63 +0.2 381,970 - MPMX19_04075 0.63 -0.2 382,128 + MPMX19_04075 0.78 +0.8 382,128 + MPMX19_04075 0.78 +0.3 382,129 - MPMX19_04075 0.78 +0.7 382,188 + MPMX19_04075 0.84 +0.5 382,188 + MPMX19_04075 0.84 +1.0 382,188 + MPMX19_04075 0.84 -0.8 382,188 + MPMX19_04075 0.84 -1.4 382,188 + MPMX19_04075 0.84 +0.3 382,189 - MPMX19_04075 0.84 -0.1 382,189 - MPMX19_04075 0.84 +0.3 382,189 - MPMX19_04075 0.84 -0.8 382,257 + MPMX19_04075 0.90 +1.2 382,257 + MPMX19_04075 0.90 +2.0 382,257 + MPMX19_04075 0.90 +0.6 382,257 + MPMX19_04075 0.90 -0.2 382,257 + MPMX19_04075 0.90 +0.6 382,257 + MPMX19_04075 0.90 -0.5 382,257 + MPMX19_04075 0.90 +0.8 382,258 - +0.9 382,258 - +1.0 382,258 - +0.4 382,258 - +0.1 382,338 + -0.9 382,338 + -0.0 382,338 + -0.4 382,338 + +0.4 382,338 + -1.0 382,338 + -1.2 382,338 + -1.2 382,338 + -0.0 382,338 + -0.5 382,338 + -0.1 382,338 + +0.3 382,339 - -1.0 382,339 - -0.4 382,339 - +0.8 382,339 - -0.6 382,339 - -0.4 382,339 - -1.4 382,339 - -1.3 382,339 - -1.8 382,392 + -1.4 382,392 + -1.5 382,393 - -0.2 382,490 - +0.6 382,490 - -0.2 382,566 + -0.2 382,566 + -0.2 382,566 + +0.3 382,566 + +0.4 382,566 + -1.5 382,567 - +0.6 382,567 - -0.4 382,567 - -1.2 382,567 - -0.7 382,567 - -1.2 382,567 - -0.3 382,567 - +1.6 382,567 - -3.0 382,567 - +0.6 382,567 - -2.0 382,567 - +0.4 382,567 - -0.7 383,082 + MPMX19_04076 0.64 -1.0 383,082 + MPMX19_04076 0.64 +0.6 383,082 + MPMX19_04076 0.64 +1.0 383,082 + MPMX19_04076 0.64 -0.2 383,082 + MPMX19_04076 0.64 +0.4 383,082 + MPMX19_04076 0.64 -0.4 383,082 + MPMX19_04076 0.64 +0.7 383,083 - MPMX19_04076 0.64 -1.0 383,083 - MPMX19_04076 0.64 +0.2 383,097 + MPMX19_04076 0.66 -1.7 383,097 + MPMX19_04076 0.66 -1.3 383,098 - MPMX19_04076 0.66 -0.7 383,098 - MPMX19_04076 0.66 -1.0 383,190 + MPMX19_04076 0.79 -0.6 383,190 + MPMX19_04076 0.79 -0.4 383,190 + MPMX19_04076 0.79 -0.2 383,190 + MPMX19_04076 0.79 -1.5 383,190 + MPMX19_04076 0.79 -0.4 383,190 + MPMX19_04076 0.79 -0.0 383,190 + MPMX19_04076 0.79 -0.2 383,190 + MPMX19_04076 0.79 -0.1 383,190 + MPMX19_04076 0.79 -0.1 383,190 + MPMX19_04076 0.79 +0.0 383,190 + MPMX19_04076 0.79 +0.2 383,190 + MPMX19_04076 0.79 +0.6 383,190 + MPMX19_04076 0.79 -0.6 383,190 + MPMX19_04076 0.79 +1.2 383,190 + MPMX19_04076 0.79 -0.4 383,190 + MPMX19_04076 0.79 +0.8 383,190 + MPMX19_04076 0.79 +1.6 383,190 + MPMX19_04076 0.79 -1.7 383,190 + MPMX19_04076 0.79 +1.2 383,190 + MPMX19_04076 0.79 +0.7 383,190 + MPMX19_04076 0.79 +1.6 383,190 + MPMX19_04076 0.79 +0.2 383,190 - MPMX19_04076 0.79 +2.4 383,191 - MPMX19_04076 0.79 -0.7 383,191 - MPMX19_04076 0.79 +0.6 383,191 - MPMX19_04076 0.79 +0.5 383,191 - MPMX19_04076 0.79 -0.7 383,191 - MPMX19_04076 0.79 +0.4 383,191 - MPMX19_04076 0.79 +1.4 383,191 - MPMX19_04076 0.79 +0.1 383,191 - MPMX19_04076 0.79 +0.7 383,191 - MPMX19_04076 0.79 -1.5 383,191 - MPMX19_04076 0.79 -1.1 383,191 - MPMX19_04076 0.79 -0.0 383,191 - MPMX19_04076 0.79 +0.4 383,191 - MPMX19_04076 0.79 -2.5 383,191 - MPMX19_04076 0.79 -0.4 383,191 - MPMX19_04076 0.79 +0.3 383,191 - MPMX19_04076 0.79 +0.1 383,191 - MPMX19_04076 0.79 +1.6 383,191 - MPMX19_04076 0.79 -0.5 383,191 - MPMX19_04076 0.79 -1.8 383,191 - MPMX19_04076 0.79 +0.6 383,191 - MPMX19_04076 0.79 +1.0 383,191 - MPMX19_04076 0.79 -0.7 383,191 - MPMX19_04076 0.79 +0.0 383,191 - MPMX19_04076 0.79 -0.5 383,191 - MPMX19_04076 0.79 +0.3 383,191 - MPMX19_04076 0.79 -0.7 383,191 - MPMX19_04076 0.79 -2.3 383,191 - MPMX19_04076 0.79 +0.1 383,191 - MPMX19_04076 0.79 -1.8 383,191 - MPMX19_04076 0.79 -1.0 383,191 - MPMX19_04076 0.79 -1.7 383,191 - MPMX19_04076 0.79 -3.3 383,388 + -1.8 383,389 - -0.4 383,389 - -1.4 383,389 - -1.3 383,491 + +0.0 383,491 + -0.6 383,491 + +0.6 383,491 + -2.6 383,491 + -0.9 383,492 - -1.0 383,492 - -1.6 383,492 - -0.6 383,897 + MPMX19_04077 0.36 +1.2 383,897 + MPMX19_04077 0.36 -0.4 383,897 + MPMX19_04077 0.36 +1.0 383,897 + MPMX19_04077 0.36 +1.0 383,897 + MPMX19_04077 0.36 -1.0 383,897 + MPMX19_04077 0.36 -1.4 383,897 + MPMX19_04077 0.36 -1.1 383,897 + MPMX19_04077 0.36 +0.6 383,897 + MPMX19_04077 0.36 -0.5 383,897 + MPMX19_04077 0.36 +0.6 383,897 + MPMX19_04077 0.36 -2.3 383,897 + MPMX19_04077 0.36 -1.4 383,897 + MPMX19_04077 0.36 -1.3 383,897 + MPMX19_04077 0.36 -0.6 383,898 - MPMX19_04077 0.36 +0.4 383,898 - MPMX19_04077 0.36 +0.7 383,898 - MPMX19_04077 0.36 -0.3 383,898 - MPMX19_04077 0.36 +0.0 383,898 - MPMX19_04077 0.36 +0.6
Or see this region's nucleotide sequence