Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04008

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04006 and MPMX19_04007 overlap by 4 nucleotidesMPMX19_04007 and MPMX19_04008 overlap by 26 nucleotidesMPMX19_04008 and MPMX19_04009 overlap by 4 nucleotidesMPMX19_04009 and MPMX19_04010 are separated by 11 nucleotides MPMX19_04006: MPMX19_04006 - Glutathione transport system permease protein GsiC, at 302,700 to 303,620 _04006 MPMX19_04007: MPMX19_04007 - Glutathione transport system permease protein GsiD, at 303,617 to 304,504 _04007 MPMX19_04008: MPMX19_04008 - Beta-peptidyl aminopeptidase BapA, at 304,479 to 305,588 _04008 MPMX19_04009: MPMX19_04009 - D-aminopeptidase, at 305,585 to 306,418 _04009 MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401 _04010 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.502 kb on - strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.511 kb on - strand, within MPMX19_04006at 303.511 kb on - strand, within MPMX19_04006at 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.612 kb on + strandat 303.806 kb on + strand, within MPMX19_04007at 303.860 kb on + strand, within MPMX19_04007at 303.860 kb on + strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.415 kb on + strand, within MPMX19_04007at 304.415 kb on + strand, within MPMX19_04007at 304.416 kb on - strandat 304.686 kb on + strand, within MPMX19_04008at 304.687 kb on - strand, within MPMX19_04008at 305.396 kb on + strand, within MPMX19_04008at 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.666 kb on + strandat 305.667 kb on - strandat 305.667 kb on - strandat 305.912 kb on + strand, within MPMX19_04009at 305.912 kb on + strand, within MPMX19_04009at 305.913 kb on - strand, within MPMX19_04009at 305.996 kb on + strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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303,502 - MPMX19_04006 0.87 +2.0
303,510 + MPMX19_04006 0.88 +0.0
303,510 + MPMX19_04006 0.88 +1.0
303,510 + MPMX19_04006 0.88 -1.6
303,510 + MPMX19_04006 0.88 +0.7
303,511 - MPMX19_04006 0.88 -0.9
303,511 - MPMX19_04006 0.88 -1.6
303,585 + +0.3
303,585 + -0.9
303,585 + +0.2
303,585 + +0.0
303,585 + -0.6
303,585 + -1.1
303,585 + -0.4
303,586 - -0.9
303,586 - -0.3
303,586 - -0.1
303,586 - -2.0
303,586 - -2.1
303,586 - -1.4
303,586 - -0.0
303,586 - -1.4
303,586 - -0.7
303,586 - -0.2
303,612 + -0.4
303,806 + MPMX19_04007 0.21 -2.2
303,860 + MPMX19_04007 0.27 -0.2
303,860 + MPMX19_04007 0.27 +0.2
303,861 - MPMX19_04007 0.27 -0.1
303,861 - MPMX19_04007 0.27 -2.2
303,861 - MPMX19_04007 0.27 +0.0
303,861 - MPMX19_04007 0.27 -1.8
303,861 - MPMX19_04007 0.27 +0.3
303,861 - MPMX19_04007 0.27 -0.5
304,100 + MPMX19_04007 0.54 +0.2
304,100 + MPMX19_04007 0.54 +0.8
304,100 + MPMX19_04007 0.54 +1.0
304,100 + MPMX19_04007 0.54 -1.2
304,100 + MPMX19_04007 0.54 +0.6
304,100 + MPMX19_04007 0.54 -1.1
304,100 + MPMX19_04007 0.54 -0.7
304,100 + MPMX19_04007 0.54 -2.1
304,100 + MPMX19_04007 0.54 +0.4
304,100 + MPMX19_04007 0.54 +2.1
304,100 + MPMX19_04007 0.54 +0.4
304,100 + MPMX19_04007 0.54 +1.2
304,100 + MPMX19_04007 0.54 -0.4
304,101 - MPMX19_04007 0.55 -0.1
304,101 - MPMX19_04007 0.55 -1.1
304,101 - MPMX19_04007 0.55 -1.0
304,101 - MPMX19_04007 0.55 -0.7
304,101 - MPMX19_04007 0.55 +0.3
304,101 - MPMX19_04007 0.55 +0.4
304,101 - MPMX19_04007 0.55 +0.2
304,101 - MPMX19_04007 0.55 -0.6
304,101 - MPMX19_04007 0.55 -2.0
304,101 - MPMX19_04007 0.55 +0.3
304,101 - MPMX19_04007 0.55 -1.1
304,101 - MPMX19_04007 0.55 +0.2
304,101 - MPMX19_04007 0.55 +0.4
304,101 - MPMX19_04007 0.55 -0.4
304,101 - MPMX19_04007 0.55 -1.4
304,101 - MPMX19_04007 0.55 +0.6
304,101 - MPMX19_04007 0.55 -0.1
304,178 + MPMX19_04007 0.63 -0.0
304,178 + MPMX19_04007 0.63 +0.3
304,178 + MPMX19_04007 0.63 -0.7
304,178 + MPMX19_04007 0.63 -1.0
304,178 + MPMX19_04007 0.63 +0.5
304,178 + MPMX19_04007 0.63 -0.2
304,178 + MPMX19_04007 0.63 -0.7
304,179 - MPMX19_04007 0.63 -1.5
304,179 - MPMX19_04007 0.63 +0.0
304,179 - MPMX19_04007 0.63 +0.0
304,179 - MPMX19_04007 0.63 -1.6
304,268 + MPMX19_04007 0.73 +0.2
304,268 + MPMX19_04007 0.73 -0.4
304,268 + MPMX19_04007 0.73 +0.2
304,268 + MPMX19_04007 0.73 +0.9
304,268 + MPMX19_04007 0.73 +0.3
304,268 + MPMX19_04007 0.73 -1.6
304,268 + MPMX19_04007 0.73 +0.6
304,268 + MPMX19_04007 0.73 -1.2
304,268 + MPMX19_04007 0.73 -0.6
304,269 - MPMX19_04007 0.73 -0.6
304,269 - MPMX19_04007 0.73 -1.2
304,269 - MPMX19_04007 0.73 +0.5
304,269 - MPMX19_04007 0.73 -0.3
304,269 - MPMX19_04007 0.73 -1.1
304,385 + MPMX19_04007 0.86 -0.4
304,385 + MPMX19_04007 0.86 +1.4
304,385 + MPMX19_04007 0.86 -0.8
304,385 + MPMX19_04007 0.86 +0.6
304,385 + MPMX19_04007 0.86 +1.2
304,385 + MPMX19_04007 0.86 -0.6
304,385 + MPMX19_04007 0.86 -1.2
304,385 + MPMX19_04007 0.86 -1.4
304,385 + MPMX19_04007 0.86 +0.3
304,385 + MPMX19_04007 0.86 -1.7
304,385 + MPMX19_04007 0.86 -1.4
304,385 + MPMX19_04007 0.86 -0.1
304,385 + MPMX19_04007 0.86 +0.2
304,385 + MPMX19_04007 0.86 -2.8
304,386 - MPMX19_04007 0.87 +0.5
304,386 - MPMX19_04007 0.87 +1.8
304,386 - MPMX19_04007 0.87 -2.2
304,386 - MPMX19_04007 0.87 -0.2
304,386 - MPMX19_04007 0.87 -1.4
304,386 - MPMX19_04007 0.87 -0.7
304,386 - MPMX19_04007 0.87 -0.6
304,386 - MPMX19_04007 0.87 -1.0
304,386 - MPMX19_04007 0.87 +0.6
304,386 - MPMX19_04007 0.87 -1.2
304,386 - MPMX19_04007 0.87 -0.9
304,415 + MPMX19_04007 0.90 +1.0
304,415 + MPMX19_04007 0.90 +0.2
304,416 - -0.7
304,686 + MPMX19_04008 0.19 -0.9
304,687 - MPMX19_04008 0.19 +0.4
305,396 + MPMX19_04008 0.83 -0.8
305,563 + -0.2
305,563 + +0.4
305,563 + +0.5
305,563 + +0.3
305,594 + +0.0
305,594 + +0.2
305,594 + -0.8
305,594 + -0.6
305,594 + -2.5
305,594 + -2.2
305,594 + -1.4
305,594 + -0.9
305,594 + -0.6
305,594 + -2.2
305,594 + +0.1
305,594 + -1.4
305,594 + -0.3
305,594 + +1.2
305,594 + -1.8
305,595 - -0.8
305,595 - -0.1
305,595 - -0.0
305,595 - +0.0
305,595 - +0.4
305,666 + +0.2
305,667 - +0.6
305,667 - -1.2
305,912 + MPMX19_04009 0.39 -1.7
305,912 + MPMX19_04009 0.39 +0.6
305,913 - MPMX19_04009 0.39 -0.3
305,996 + MPMX19_04009 0.49 -2.3
305,997 - MPMX19_04009 0.49 -0.2
305,997 - MPMX19_04009 0.49 -1.0
305,997 - MPMX19_04009 0.49 +0.2
305,997 - MPMX19_04009 0.49 -1.3
306,005 + MPMX19_04009 0.50 -0.9
306,005 + MPMX19_04009 0.50 -1.3
306,005 + MPMX19_04009 0.50 -2.5
306,005 + MPMX19_04009 0.50 +0.5
306,005 + MPMX19_04009 0.50 -0.3
306,005 + MPMX19_04009 0.50 -1.3
306,005 + MPMX19_04009 0.50 -1.7
306,005 + MPMX19_04009 0.50 -0.9
306,006 - MPMX19_04009 0.50 -0.1
306,006 - MPMX19_04009 0.50 -0.4
306,006 - MPMX19_04009 0.50 +0.2

Or see this region's nucleotide sequence