Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03825 and MPMX19_03826 are separated by 26 nucleotides MPMX19_03826 and MPMX19_03827 are separated by 40 nucleotides
MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074
_03825
MPMX19_03826: MPMX19_03826 - putative methyltransferase, at 64,101 to 64,862
_03826
MPMX19_03827: MPMX19_03827 - hypothetical protein, at 64,903 to 66,408
_03827
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.344 kb on + strand, within MPMX19_03825 at 63.345 kb on - strand, within MPMX19_03825 at 64.114 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.834 kb on + strand at 64.862 kb on + strand at 64.862 kb on + strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.183 kb on + strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.496 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 63,131 + -1.1 63,131 + -1.5 63,131 + -0.1 63,131 + -0.4 63,131 + +0.8 63,131 + -0.1 63,131 + +0.4 63,132 - -0.2 63,132 - -0.9 63,132 - -0.1 63,132 - -0.5 63,344 + MPMX19_03825 0.23 -2.5 63,345 - MPMX19_03825 0.23 +0.6 64,114 + +0.3 64,813 + -2.0 64,813 + -1.2 64,813 + -1.2 64,813 + -1.9 64,813 + -0.0 64,813 + -1.8 64,813 + +0.1 64,814 - -0.4 64,814 - +0.1 64,814 - +0.1 64,814 - -1.3 64,814 - +0.1 64,814 - +0.5 64,814 - +0.6 64,814 - -0.6 64,814 - -0.7 64,814 - +0.1 64,814 - -0.7 64,814 - -0.4 64,834 + -1.3 64,862 + +0.3 64,862 + +0.7 64,863 - -0.5 64,863 - +0.2 64,863 - -0.3 64,904 + -1.2 64,904 + -1.8 64,904 + -1.1 64,904 + -0.7 64,904 + -0.9 64,904 + +0.1 64,904 + -1.2 64,904 + +0.9 64,904 + +1.0 64,904 + -1.8 64,904 + -0.7 64,904 + +0.2 64,904 + +0.1 64,904 + -1.1 64,904 + -1.1 64,904 + -0.1 64,904 + -2.9 64,904 + -1.5 64,904 + +1.4 64,904 + -0.7 64,904 + -2.1 64,904 + -0.9 64,904 + -0.4 64,904 + -0.2 64,904 + -1.7 64,904 + -1.0 64,904 + +0.9 64,904 + -0.4 64,904 + +0.2 64,904 + -1.8 64,904 + -0.7 64,904 + -1.5 64,904 + +0.1 64,904 + +1.4 64,905 - -0.1 64,905 - -0.1 64,905 - +1.6 64,905 - +0.6 64,905 - -0.7 64,905 - -1.9 64,905 - -0.3 64,905 - +0.8 64,905 - -2.1 64,905 - -0.4 64,905 - +0.2 64,905 - -1.7 64,905 - -0.0 64,905 - +0.1 64,905 - +0.7 64,905 - -0.8 64,905 - -1.3 64,905 - -0.2 64,905 - -1.8 64,905 - +0.1 64,905 - -0.2 64,905 - +0.8 64,905 - +0.6 64,905 - +0.6 64,905 - -0.7 64,905 - -1.4 64,905 - -1.7 65,129 + MPMX19_03827 0.15 -0.6 65,129 + MPMX19_03827 0.15 -2.5 65,129 + MPMX19_03827 0.15 +1.6 65,129 + MPMX19_03827 0.15 -0.2 65,129 + MPMX19_03827 0.15 -3.3 65,129 + MPMX19_03827 0.15 -0.8 65,129 + MPMX19_03827 0.15 -1.2 65,129 + MPMX19_03827 0.15 -1.4 65,129 + MPMX19_03827 0.15 -1.0 65,129 + MPMX19_03827 0.15 +0.9 65,129 + MPMX19_03827 0.15 -0.4 65,130 - MPMX19_03827 0.15 -2.0 65,130 - MPMX19_03827 0.15 -1.6 65,130 - MPMX19_03827 0.15 +0.8 65,130 - MPMX19_03827 0.15 -0.5 65,130 - MPMX19_03827 0.15 -0.1 65,130 - MPMX19_03827 0.15 -2.1 65,130 - MPMX19_03827 0.15 -1.7 65,130 - MPMX19_03827 0.15 +0.5 65,130 - MPMX19_03827 0.15 +0.5 65,130 - MPMX19_03827 0.15 -1.2 65,130 - MPMX19_03827 0.15 -0.8 65,130 - MPMX19_03827 0.15 -0.8 65,130 - MPMX19_03827 0.15 -2.4 65,130 - MPMX19_03827 0.15 +0.5 65,130 - MPMX19_03827 0.15 -0.4 65,130 - MPMX19_03827 0.15 +0.6 65,130 - MPMX19_03827 0.15 -0.4 65,183 + MPMX19_03827 0.19 -0.7 65,184 - MPMX19_03827 0.19 -1.1 65,184 - MPMX19_03827 0.19 -1.4 65,496 + MPMX19_03827 0.39 -1.7 65,534 + MPMX19_03827 0.42 -2.0 65,534 + MPMX19_03827 0.42 -0.3 65,534 + MPMX19_03827 0.42 +0.3 65,535 - MPMX19_03827 0.42 +0.4 65,535 - MPMX19_03827 0.42 -1.2
Or see this region's nucleotide sequence