Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03824 and MPMX19_03825 are separated by 292 nucleotides MPMX19_03825 and MPMX19_03826 are separated by 26 nucleotides MPMX19_03826 and MPMX19_03827 are separated by 40 nucleotides
MPMX19_03824: MPMX19_03824 - hypothetical protein, at 62,088 to 62,837
_03824
MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074
_03825
MPMX19_03826: MPMX19_03826 - putative methyltransferase, at 64,101 to 64,862
_03826
MPMX19_03827: MPMX19_03827 - hypothetical protein, at 64,903 to 66,408
_03827
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.225 kb on - strand, within MPMX19_03824 at 62.225 kb on - strand, within MPMX19_03824 at 62.225 kb on - strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.324 kb on - strand, within MPMX19_03824 at 62.388 kb on - strand, within MPMX19_03824 at 62.417 kb on + strand, within MPMX19_03824 at 62.418 kb on - strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.527 kb on - strand, within MPMX19_03824 at 62.527 kb on - strand, within MPMX19_03824 at 62.529 kb on + strand, within MPMX19_03824 at 62.529 kb on + strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.873 kb on - strand at 62.898 kb on - strand at 62.898 kb on - strand at 62.949 kb on + strand at 62.949 kb on + strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.344 kb on + strand, within MPMX19_03825 at 63.345 kb on - strand, within MPMX19_03825 at 64.114 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.834 kb on + strand at 64.862 kb on + strand at 64.862 kb on + strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 62,225 - MPMX19_03824 0.18 -0.2 62,225 - MPMX19_03824 0.18 -0.3 62,225 - MPMX19_03824 0.18 -0.5 62,255 + MPMX19_03824 0.22 -1.0 62,255 + MPMX19_03824 0.22 -0.5 62,255 + MPMX19_03824 0.22 +0.3 62,256 - MPMX19_03824 0.22 -1.8 62,256 - MPMX19_03824 0.22 -0.3 62,256 - MPMX19_03824 0.22 -0.8 62,257 + MPMX19_03824 0.23 -0.8 62,257 + MPMX19_03824 0.23 -0.1 62,257 + MPMX19_03824 0.23 -0.9 62,257 + MPMX19_03824 0.23 -0.3 62,258 - MPMX19_03824 0.23 -1.4 62,258 - MPMX19_03824 0.23 +1.4 62,258 - MPMX19_03824 0.23 -0.9 62,258 - MPMX19_03824 0.23 -0.4 62,323 + MPMX19_03824 0.31 -0.8 62,323 + MPMX19_03824 0.31 -0.8 62,323 + MPMX19_03824 0.31 +0.1 62,324 - MPMX19_03824 0.31 -1.7 62,388 - MPMX19_03824 0.40 -0.1 62,417 + MPMX19_03824 0.44 -1.8 62,418 - MPMX19_03824 0.44 -1.4 62,419 + MPMX19_03824 0.44 -0.2 62,419 + MPMX19_03824 0.44 +0.2 62,419 + MPMX19_03824 0.44 -1.2 62,419 + MPMX19_03824 0.44 +0.8 62,419 + MPMX19_03824 0.44 +0.2 62,419 + MPMX19_03824 0.44 +0.3 62,419 + MPMX19_03824 0.44 -0.8 62,420 - MPMX19_03824 0.44 -0.4 62,420 - MPMX19_03824 0.44 +1.4 62,420 - MPMX19_03824 0.44 -0.4 62,420 - MPMX19_03824 0.44 -0.5 62,420 - MPMX19_03824 0.44 -0.7 62,420 - MPMX19_03824 0.44 +0.6 62,526 + MPMX19_03824 0.58 -1.5 62,526 + MPMX19_03824 0.58 +0.3 62,526 + MPMX19_03824 0.58 +0.1 62,527 - MPMX19_03824 0.59 +1.3 62,527 - MPMX19_03824 0.59 -0.9 62,529 + MPMX19_03824 0.59 +0.6 62,529 + MPMX19_03824 0.59 -1.6 62,530 - MPMX19_03824 0.59 +0.4 62,530 - MPMX19_03824 0.59 +0.2 62,530 - MPMX19_03824 0.59 -0.1 62,873 - +0.4 62,898 - -0.1 62,898 - -0.7 62,949 + -1.2 62,949 + +0.3 62,950 - +0.0 62,950 - -1.6 63,131 + -1.1 63,131 + -1.5 63,131 + -0.1 63,131 + -0.4 63,131 + +0.8 63,131 + -0.1 63,131 + +0.4 63,132 - -0.2 63,132 - -0.9 63,132 - -0.1 63,132 - -0.5 63,344 + MPMX19_03825 0.23 -2.5 63,345 - MPMX19_03825 0.23 +0.6 64,114 + +0.3 64,813 + -2.0 64,813 + -1.2 64,813 + -1.2 64,813 + -1.9 64,813 + -0.0 64,813 + -1.8 64,813 + +0.1 64,814 - -0.4 64,814 - +0.1 64,814 - +0.1 64,814 - -1.3 64,814 - +0.1 64,814 - +0.5 64,814 - +0.6 64,814 - -0.6 64,814 - -0.7 64,814 - +0.1 64,814 - -0.7 64,814 - -0.4 64,834 + -1.3 64,862 + +0.3 64,862 + +0.7 64,863 - -0.5 64,863 - +0.2 64,863 - -0.3 64,904 + -1.2 64,904 + -1.8 64,904 + -1.1 64,904 + -0.7 64,904 + -0.9 64,904 + +0.1 64,904 + -1.2 64,904 + +0.9 64,904 + +1.0 64,904 + -1.8 64,904 + -0.7 64,904 + +0.2 64,904 + +0.1 64,904 + -1.1 64,904 + -1.1 64,904 + -0.1 64,904 + -2.9 64,904 + -1.5 64,904 + +1.4 64,904 + -0.7 64,904 + -2.1 64,904 + -0.9 64,904 + -0.4 64,904 + -0.2 64,904 + -1.7 64,904 + -1.0 64,904 + +0.9 64,904 + -0.4 64,904 + +0.2 64,904 + -1.8 64,904 + -0.7 64,904 + -1.5 64,904 + +0.1 64,904 + +1.4 64,905 - -0.1 64,905 - -0.1 64,905 - +1.6 64,905 - +0.6 64,905 - -0.7 64,905 - -1.9 64,905 - -0.3 64,905 - +0.8 64,905 - -2.1 64,905 - -0.4 64,905 - +0.2 64,905 - -1.7 64,905 - -0.0 64,905 - +0.1 64,905 - +0.7 64,905 - -0.8 64,905 - -1.3 64,905 - -0.2 64,905 - -1.8 64,905 - +0.1 64,905 - -0.2 64,905 - +0.8 64,905 - +0.6 64,905 - +0.6 64,905 - -0.7 64,905 - -1.4 64,905 - -1.7
Or see this region's nucleotide sequence