Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03495 and MPMX19_03496 are separated by 9 nucleotides MPMX19_03496 and MPMX19_03497 are separated by 252 nucleotides
MPMX19_03495: MPMX19_03495 - Adaptive-response sensory-kinase SasA, at 910,849 to 912,963
_03495
MPMX19_03496: MPMX19_03496 - Protein FdhE, at 912,973 to 913,887
_03496
MPMX19_03497: MPMX19_03497 - Formate dehydrogenase-O major subunit, at 914,140 to 917,202
_03497
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 912.433 kb on + strand, within MPMX19_03495 at 912.433 kb on + strand, within MPMX19_03495 at 912.433 kb on + strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.283 kb on + strand, within MPMX19_03496 at 913.284 kb on - strand, within MPMX19_03496 at 913.860 kb on + strand at 913.936 kb on + strand at 913.936 kb on + strand at 913.936 kb on + strand at 913.937 kb on - strand at 913.937 kb on - strand at 913.991 kb on + strand at 913.992 kb on - strand at 913.992 kb on - strand at 913.992 kb on - strand at 914.041 kb on + strand at 914.293 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.371 kb on - strand at 914.467 kb on + strand, within MPMX19_03497 at 914.467 kb on + strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 912,433 + MPMX19_03495 0.75 -1.0 912,433 + MPMX19_03495 0.75 -2.1 912,433 + MPMX19_03495 0.75 -0.3 912,434 - MPMX19_03495 0.75 -0.2 912,434 - MPMX19_03495 0.75 +0.3 912,434 - MPMX19_03495 0.75 -2.6 912,434 - MPMX19_03495 0.75 -0.2 912,434 - MPMX19_03495 0.75 -1.8 912,434 - MPMX19_03495 0.75 +0.6 913,260 + MPMX19_03496 0.31 -1.1 913,260 + MPMX19_03496 0.31 -2.7 913,260 + MPMX19_03496 0.31 -0.1 913,260 + MPMX19_03496 0.31 -1.7 913,261 - MPMX19_03496 0.31 -0.2 913,261 - MPMX19_03496 0.31 -0.4 913,261 - MPMX19_03496 0.31 -1.8 913,261 - MPMX19_03496 0.31 -2.1 913,283 + MPMX19_03496 0.34 -2.0 913,284 - MPMX19_03496 0.34 +0.7 913,860 + -2.0 913,936 + -1.2 913,936 + -1.7 913,936 + +0.6 913,937 - -0.4 913,937 - +0.6 913,991 + -1.7 913,992 - -0.0 913,992 - -0.2 913,992 - -0.1 914,041 + +0.3 914,293 + +0.8 914,323 + -0.9 914,323 + -0.1 914,323 + -0.3 914,323 + -1.3 914,323 + -1.0 914,323 + -1.0 914,323 + -0.1 914,324 - +0.2 914,324 - -0.5 914,324 - -0.8 914,324 - -2.7 914,371 - -0.2 914,467 + MPMX19_03497 0.11 +0.5 914,467 + MPMX19_03497 0.11 +0.8 914,468 - MPMX19_03497 0.11 -1.4 914,468 - MPMX19_03497 0.11 -3.3 914,468 - MPMX19_03497 0.11 +0.4 914,468 - MPMX19_03497 0.11 +0.9 914,547 + MPMX19_03497 0.13 +0.5 914,547 + MPMX19_03497 0.13 +0.1 914,547 + MPMX19_03497 0.13 +1.1
Or see this region's nucleotide sequence