Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03244 and MPMX19_03245 are separated by 31 nucleotides MPMX19_03245 and MPMX19_03246 are separated by 6 nucleotides
MPMX19_03244: MPMX19_03244 - D-alanine--D-alanyl carrier protein ligase, at 566,054 to 583,993
_03244
MPMX19_03245: MPMX19_03245 - Carboxylesterase NlhH, at 584,025 to 584,999
_03245
MPMX19_03246: MPMX19_03246 - Ferrichrome outer membrane transporter/phage receptor, at 585,006 to 587,312
_03246
Position (kb) 584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 583.200 kb on - strand at 583.200 kb on - strand at 583.200 kb on - strand at 583.313 kb on + strand at 583.313 kb on + strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.314 kb on - strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.352 kb on + strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.353 kb on - strand at 583.974 kb on + strand at 583.974 kb on + strand at 583.974 kb on + strand at 584.016 kb on + strand at 584.016 kb on + strand at 584.016 kb on + strand at 584.241 kb on + strand, within MPMX19_03245 at 584.241 kb on + strand, within MPMX19_03245 at 584.242 kb on - strand, within MPMX19_03245 at 584.242 kb on - strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.301 kb on + strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.302 kb on - strand, within MPMX19_03245 at 584.598 kb on + strand, within MPMX19_03245 at 584.598 kb on + strand, within MPMX19_03245 at 584.635 kb on + strand, within MPMX19_03245 at 584.635 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.688 kb on + strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.689 kb on - strand, within MPMX19_03245 at 584.697 kb on + strand, within MPMX19_03245 at 584.697 kb on + strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.698 kb on - strand, within MPMX19_03245 at 584.838 kb on + strand, within MPMX19_03245 at 584.839 kb on - strand, within MPMX19_03245 at 584.878 kb on + strand, within MPMX19_03245 at 584.878 kb on + strand, within MPMX19_03245 at 584.878 kb on + strand, within MPMX19_03245 at 584.879 kb on - strand, within MPMX19_03245 at 584.879 kb on - strand, within MPMX19_03245 at 584.879 kb on - strand, within MPMX19_03245 at 584.879 kb on - strand, within MPMX19_03245 at 584.879 kb on - strand, within MPMX19_03245 at 584.886 kb on + strand, within MPMX19_03245 at 584.886 kb on + strand, within MPMX19_03245 at 584.887 kb on - strand, within MPMX19_03245 at 584.887 kb on - strand, within MPMX19_03245 at 584.887 kb on - strand, within MPMX19_03245 at 584.887 kb on - strand, within MPMX19_03245 at 585.016 kb on + strand at 585.016 kb on + strand at 585.016 kb on + strand at 585.017 kb on - strand at 585.017 kb on - strand at 585.053 kb on - strand at 585.088 kb on + strand at 585.088 kb on + strand at 585.088 kb on + strand at 585.088 kb on + strand at 585.089 kb on - strand at 585.089 kb on - strand at 585.089 kb on - strand at 585.167 kb on - strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.194 kb on - strand at 585.226 kb on + strand at 585.226 kb on + strand at 585.226 kb on + strand at 585.226 kb on + strand at 585.226 kb on + strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.227 kb on - strand at 585.241 kb on + strand, within MPMX19_03246 at 585.241 kb on + strand, within MPMX19_03246 at 585.241 kb on + strand, within MPMX19_03246 at 585.241 kb on + strand, within MPMX19_03246 at 585.241 kb on + strand, within MPMX19_03246 at 585.242 kb on - strand, within MPMX19_03246 at 585.242 kb on - strand, within MPMX19_03246 at 585.242 kb on - strand, within MPMX19_03246 at 585.242 kb on - strand, within MPMX19_03246 at 585.290 kb on + strand, within MPMX19_03246 at 585.290 kb on + strand, within MPMX19_03246 at 585.291 kb on - strand, within MPMX19_03246 at 585.291 kb on - strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.403 kb on + strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.404 kb on - strand, within MPMX19_03246 at 585.409 kb on + strand, within MPMX19_03246 at 585.409 kb on + strand, within MPMX19_03246 at 585.409 kb on + strand, within MPMX19_03246 at 585.409 kb on + strand, within MPMX19_03246 at 585.409 kb on + strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.410 kb on - strand, within MPMX19_03246 at 585.499 kb on + strand, within MPMX19_03246 at 585.499 kb on + strand, within MPMX19_03246 at 585.499 kb on + strand, within MPMX19_03246 at 585.694 kb on + strand, within MPMX19_03246 at 585.694 kb on + strand, within MPMX19_03246 at 585.694 kb on + strand, within MPMX19_03246 at 585.694 kb on + strand, within MPMX19_03246 at 585.694 kb on + strand, within MPMX19_03246 at 585.695 kb on - strand, within MPMX19_03246 at 585.722 kb on - strand, within MPMX19_03246 at 585.734 kb on + strand, within MPMX19_03246 at 585.735 kb on - strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.877 kb on + strand, within MPMX19_03246 at 585.878 kb on - strand, within MPMX19_03246 at 585.878 kb on - strand, within MPMX19_03246 at 585.878 kb on - strand, within MPMX19_03246 at 585.937 kb on + strand, within MPMX19_03246 at 585.937 kb on + strand, within MPMX19_03246 at 585.937 kb on + strand, within MPMX19_03246 at 585.937 kb on + strand, within MPMX19_03246 at 585.937 kb on + strand, within MPMX19_03246 at 585.938 kb on - strand, within MPMX19_03246 at 585.938 kb on - strand, within MPMX19_03246 at 585.949 kb on + strand, within MPMX19_03246 at 585.949 kb on + strand, within MPMX19_03246
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 583,200 - -0.7 583,200 - -0.5 583,200 - -0.8 583,313 + +0.0 583,313 + -0.2 583,314 - -1.2 583,314 - -0.0 583,314 - +0.3 583,314 - -1.7 583,314 - -0.4 583,314 - -0.1 583,314 - -0.2 583,314 - -0.1 583,314 - -0.2 583,352 + +0.7 583,352 + -0.4 583,352 + +0.0 583,352 + +1.4 583,352 + -0.1 583,352 + -1.7 583,352 + +0.2 583,353 - -0.3 583,353 - +0.5 583,353 - +1.4 583,353 - -0.9 583,353 - -2.4 583,353 - -0.5 583,353 - +0.7 583,353 - -1.6 583,353 - +1.5 583,353 - -0.2 583,974 + -0.2 583,974 + +0.7 583,974 + -0.7 584,016 + -0.8 584,016 + -0.2 584,016 + -0.8 584,241 + MPMX19_03245 0.22 -2.6 584,241 + MPMX19_03245 0.22 +0.2 584,242 - MPMX19_03245 0.22 -1.3 584,242 - MPMX19_03245 0.22 +0.2 584,301 + MPMX19_03245 0.28 -0.7 584,301 + MPMX19_03245 0.28 -1.8 584,301 + MPMX19_03245 0.28 -0.1 584,301 + MPMX19_03245 0.28 -2.6 584,301 + MPMX19_03245 0.28 -0.4 584,301 + MPMX19_03245 0.28 +0.7 584,302 - MPMX19_03245 0.28 +0.4 584,302 - MPMX19_03245 0.28 -0.1 584,302 - MPMX19_03245 0.28 +0.1 584,302 - MPMX19_03245 0.28 -0.8 584,302 - MPMX19_03245 0.28 +1.0 584,302 - MPMX19_03245 0.28 -1.3 584,302 - MPMX19_03245 0.28 -0.2 584,302 - MPMX19_03245 0.28 -1.6 584,598 + MPMX19_03245 0.59 -0.2 584,598 + MPMX19_03245 0.59 -0.8 584,635 + MPMX19_03245 0.63 -1.1 584,635 + MPMX19_03245 0.63 +1.5 584,688 + MPMX19_03245 0.68 -1.7 584,688 + MPMX19_03245 0.68 -1.0 584,688 + MPMX19_03245 0.68 +1.9 584,688 + MPMX19_03245 0.68 +0.1 584,688 + MPMX19_03245 0.68 -1.1 584,688 + MPMX19_03245 0.68 -0.8 584,688 + MPMX19_03245 0.68 -1.1 584,688 + MPMX19_03245 0.68 -1.8 584,688 + MPMX19_03245 0.68 +0.3 584,688 + MPMX19_03245 0.68 -1.5 584,688 + MPMX19_03245 0.68 +2.1 584,689 - MPMX19_03245 0.68 +1.5 584,689 - MPMX19_03245 0.68 -1.7 584,689 - MPMX19_03245 0.68 -0.3 584,689 - MPMX19_03245 0.68 +0.1 584,689 - MPMX19_03245 0.68 +0.0 584,689 - MPMX19_03245 0.68 -1.7 584,689 - MPMX19_03245 0.68 -1.4 584,689 - MPMX19_03245 0.68 -2.8 584,697 + MPMX19_03245 0.69 -1.5 584,697 + MPMX19_03245 0.69 +0.4 584,698 - MPMX19_03245 0.69 -1.1 584,698 - MPMX19_03245 0.69 +0.7 584,698 - MPMX19_03245 0.69 -0.1 584,698 - MPMX19_03245 0.69 -1.0 584,698 - MPMX19_03245 0.69 -0.9 584,698 - MPMX19_03245 0.69 +0.9 584,838 + MPMX19_03245 0.83 -1.4 584,839 - MPMX19_03245 0.83 +0.9 584,878 + MPMX19_03245 0.87 +0.2 584,878 + MPMX19_03245 0.87 +0.5 584,878 + MPMX19_03245 0.87 -1.5 584,879 - MPMX19_03245 0.88 -0.7 584,879 - MPMX19_03245 0.88 -0.8 584,879 - MPMX19_03245 0.88 -0.1 584,879 - MPMX19_03245 0.88 -1.9 584,879 - MPMX19_03245 0.88 -0.3 584,886 + MPMX19_03245 0.88 -1.1 584,886 + MPMX19_03245 0.88 -0.9 584,887 - MPMX19_03245 0.88 -1.8 584,887 - MPMX19_03245 0.88 -1.7 584,887 - MPMX19_03245 0.88 -1.4 584,887 - MPMX19_03245 0.88 -0.7 585,016 + -0.5 585,016 + +0.6 585,016 + -1.1 585,017 - -0.7 585,017 - -1.3 585,053 - -1.2 585,088 + -0.4 585,088 + +0.4 585,088 + -1.3 585,088 + -0.9 585,089 - -2.5 585,089 - -1.5 585,089 - +0.1 585,167 - +0.8 585,193 + +0.3 585,193 + -0.1 585,193 + -1.8 585,193 + +0.5 585,193 + -0.1 585,193 + +0.9 585,193 + +0.9 585,194 - -0.7 585,194 - +1.0 585,194 - -0.3 585,194 - -2.4 585,194 - +0.5 585,194 - -1.1 585,194 - +0.7 585,194 - -0.9 585,194 - +0.8 585,194 - -1.7 585,194 - -0.7 585,226 + -1.6 585,226 + -0.8 585,226 + -0.5 585,226 + -1.4 585,226 + +0.1 585,227 - -1.1 585,227 - +0.7 585,227 - -1.3 585,227 - -1.2 585,227 - -0.9 585,227 - +0.5 585,227 - -0.1 585,241 + MPMX19_03246 0.10 -0.5 585,241 + MPMX19_03246 0.10 -0.9 585,241 + MPMX19_03246 0.10 -1.3 585,241 + MPMX19_03246 0.10 +0.7 585,241 + MPMX19_03246 0.10 +0.8 585,242 - MPMX19_03246 0.10 +0.6 585,242 - MPMX19_03246 0.10 +0.2 585,242 - MPMX19_03246 0.10 +0.4 585,242 - MPMX19_03246 0.10 +0.8 585,290 + MPMX19_03246 0.12 -0.3 585,290 + MPMX19_03246 0.12 -1.3 585,291 - MPMX19_03246 0.12 -1.1 585,291 - MPMX19_03246 0.12 +0.3 585,403 + MPMX19_03246 0.17 +0.8 585,403 + MPMX19_03246 0.17 -0.4 585,403 + MPMX19_03246 0.17 -0.3 585,403 + MPMX19_03246 0.17 +1.5 585,403 + MPMX19_03246 0.17 -0.1 585,403 + MPMX19_03246 0.17 +0.1 585,403 + MPMX19_03246 0.17 -0.3 585,403 + MPMX19_03246 0.17 +1.2 585,404 - MPMX19_03246 0.17 +0.8 585,404 - MPMX19_03246 0.17 -1.7 585,404 - MPMX19_03246 0.17 +0.8 585,404 - MPMX19_03246 0.17 -1.3 585,404 - MPMX19_03246 0.17 +0.2 585,404 - MPMX19_03246 0.17 -0.5 585,404 - MPMX19_03246 0.17 -0.7 585,404 - MPMX19_03246 0.17 -0.4 585,404 - MPMX19_03246 0.17 -0.5 585,404 - MPMX19_03246 0.17 +0.1 585,404 - MPMX19_03246 0.17 -0.8 585,404 - MPMX19_03246 0.17 -1.2 585,404 - MPMX19_03246 0.17 -0.1 585,404 - MPMX19_03246 0.17 +1.5 585,409 + MPMX19_03246 0.17 -0.8 585,409 + MPMX19_03246 0.17 -0.1 585,409 + MPMX19_03246 0.17 -0.8 585,409 + MPMX19_03246 0.17 -0.2 585,409 + MPMX19_03246 0.17 +0.4 585,410 - MPMX19_03246 0.18 -0.2 585,410 - MPMX19_03246 0.18 +0.6 585,410 - MPMX19_03246 0.18 -1.3 585,410 - MPMX19_03246 0.18 +1.2 585,410 - MPMX19_03246 0.18 -0.7 585,410 - MPMX19_03246 0.18 -0.2 585,499 + MPMX19_03246 0.21 -1.5 585,499 + MPMX19_03246 0.21 -0.8 585,499 + MPMX19_03246 0.21 +0.5 585,694 + MPMX19_03246 0.30 -0.6 585,694 + MPMX19_03246 0.30 -1.0 585,694 + MPMX19_03246 0.30 +0.5 585,694 + MPMX19_03246 0.30 +0.6 585,694 + MPMX19_03246 0.30 +1.5 585,695 - MPMX19_03246 0.30 -0.7 585,722 - MPMX19_03246 0.31 -0.9 585,734 + MPMX19_03246 0.32 +0.0 585,735 - MPMX19_03246 0.32 -0.9 585,877 + MPMX19_03246 0.38 +1.5 585,877 + MPMX19_03246 0.38 +0.3 585,877 + MPMX19_03246 0.38 -0.4 585,877 + MPMX19_03246 0.38 -1.1 585,877 + MPMX19_03246 0.38 +0.7 585,877 + MPMX19_03246 0.38 -0.5 585,878 - MPMX19_03246 0.38 -0.9 585,878 - MPMX19_03246 0.38 +0.0 585,878 - MPMX19_03246 0.38 -2.0 585,937 + MPMX19_03246 0.40 -0.1 585,937 + MPMX19_03246 0.40 +0.8 585,937 + MPMX19_03246 0.40 -0.4 585,937 + MPMX19_03246 0.40 +0.2 585,937 + MPMX19_03246 0.40 -1.0 585,938 - MPMX19_03246 0.40 -0.6 585,938 - MPMX19_03246 0.40 -0.2 585,949 + MPMX19_03246 0.41 -1.3 585,949 + MPMX19_03246 0.41 -0.5
Or see this region's nucleotide sequence