Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03226

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03225 and MPMX19_03226 are separated by 441 nucleotidesMPMX19_03226 and MPMX19_03227 are separated by 197 nucleotidesMPMX19_03227 and MPMX19_03228 overlap by 4 nucleotides MPMX19_03225: MPMX19_03225 - Organic hydroperoxide resistance transcriptional regulator, at 526,277 to 526,819 _03225 MPMX19_03226: MPMX19_03226 - hypothetical protein, at 527,261 to 527,554 _03226 MPMX19_03227: MPMX19_03227 - hypothetical protein, at 527,752 to 528,078 _03227 MPMX19_03228: MPMX19_03228 - L-ornithine N(5)-monooxygenase, at 528,075 to 529,433 _03228 Position (kb) 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 526.278 kb on + strandat 526.278 kb on + strandat 526.278 kb on + strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.577 kb on + strand, within MPMX19_03225at 526.577 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.650 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.669 kb on - strand, within MPMX19_03225at 526.669 kb on - strand, within MPMX19_03225at 526.739 kb on - strand, within MPMX19_03225at 526.739 kb on - strand, within MPMX19_03225at 526.878 kb on + strandat 526.878 kb on + strandat 526.878 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.262 kb on + strandat 527.263 kb on - strandat 527.263 kb on - strandat 527.270 kb on + strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.282 kb on + strandat 527.282 kb on + strandat 527.294 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.381 kb on - strand, within MPMX19_03226at 527.668 kb on + strandat 528.204 kb on + strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.334 kb on - strand, within MPMX19_03228at 528.334 kb on - strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.385 kb on - strand, within MPMX19_03228at 528.385 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.453 kb on + strand, within MPMX19_03228

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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526,278 + -1.5
526,278 + -1.7
526,278 + -0.7
526,279 - -1.5
526,279 - -0.5
526,279 - +0.8
526,279 - +1.0
526,476 + MPMX19_03225 0.37 -0.8
526,476 + MPMX19_03225 0.37 +0.0
526,476 + MPMX19_03225 0.37 -0.4
526,476 + MPMX19_03225 0.37 -0.5
526,477 - MPMX19_03225 0.37 -0.8
526,477 - MPMX19_03225 0.37 +0.7
526,477 - MPMX19_03225 0.37 +0.5
526,477 - MPMX19_03225 0.37 +1.1
526,577 + MPMX19_03225 0.55 -0.5
526,577 + MPMX19_03225 0.55 -1.2
526,596 + MPMX19_03225 0.59 +0.6
526,596 + MPMX19_03225 0.59 -1.7
526,596 + MPMX19_03225 0.59 -1.1
526,596 + MPMX19_03225 0.59 +0.2
526,596 + MPMX19_03225 0.59 +0.1
526,596 + MPMX19_03225 0.59 +0.1
526,596 + MPMX19_03225 0.59 -0.3
526,596 + MPMX19_03225 0.59 -0.3
526,596 + MPMX19_03225 0.59 -0.1
526,596 + MPMX19_03225 0.59 +1.0
526,597 - MPMX19_03225 0.59 -1.1
526,597 - MPMX19_03225 0.59 +0.1
526,597 - MPMX19_03225 0.59 -0.2
526,597 - MPMX19_03225 0.59 -0.2
526,597 - MPMX19_03225 0.59 +1.1
526,597 - MPMX19_03225 0.59 +1.2
526,597 - MPMX19_03225 0.59 -1.4
526,597 - MPMX19_03225 0.59 -1.4
526,605 + MPMX19_03225 0.60 -0.5
526,605 + MPMX19_03225 0.60 +0.2
526,605 + MPMX19_03225 0.60 -1.2
526,605 + MPMX19_03225 0.60 -0.4
526,605 + MPMX19_03225 0.60 -0.9
526,605 + MPMX19_03225 0.60 -1.7
526,605 + MPMX19_03225 0.60 -1.3
526,606 - MPMX19_03225 0.61 -0.8
526,606 - MPMX19_03225 0.61 -1.3
526,606 - MPMX19_03225 0.61 -0.0
526,606 - MPMX19_03225 0.61 -1.5
526,636 + MPMX19_03225 0.66 -0.8
526,636 + MPMX19_03225 0.66 -0.4
526,636 + MPMX19_03225 0.66 -0.3
526,636 + MPMX19_03225 0.66 +0.9
526,636 + MPMX19_03225 0.66 -0.7
526,636 + MPMX19_03225 0.66 +0.1
526,636 + MPMX19_03225 0.66 +0.2
526,636 + MPMX19_03225 0.66 -0.2
526,637 - MPMX19_03225 0.66 -0.1
526,637 - MPMX19_03225 0.66 -0.1
526,637 - MPMX19_03225 0.66 +0.8
526,637 - MPMX19_03225 0.66 +1.2
526,638 + MPMX19_03225 0.66 +0.7
526,638 + MPMX19_03225 0.66 -0.6
526,638 + MPMX19_03225 0.66 -0.7
526,638 + MPMX19_03225 0.66 -0.7
526,638 + MPMX19_03225 0.66 -0.7
526,638 + MPMX19_03225 0.66 +0.3
526,639 - MPMX19_03225 0.67 +0.2
526,639 - MPMX19_03225 0.67 -0.0
526,639 - MPMX19_03225 0.67 -1.4
526,639 - MPMX19_03225 0.67 +1.2
526,639 - MPMX19_03225 0.67 -0.1
526,639 - MPMX19_03225 0.67 -0.3
526,639 - MPMX19_03225 0.67 +0.1
526,639 - MPMX19_03225 0.67 -0.1
526,639 - MPMX19_03225 0.67 -2.1
526,650 + MPMX19_03225 0.69 -1.3
526,668 + MPMX19_03225 0.72 -0.4
526,668 + MPMX19_03225 0.72 -0.9
526,668 + MPMX19_03225 0.72 -0.1
526,669 - MPMX19_03225 0.72 +0.5
526,669 - MPMX19_03225 0.72 -0.3
526,739 - MPMX19_03225 0.85 -0.1
526,739 - MPMX19_03225 0.85 -0.8
526,878 + -0.0
526,878 + -0.2
526,878 + +1.1
527,220 + -1.1
527,220 + -1.6
527,220 + -2.4
527,221 - -0.1
527,221 - -1.9
527,221 - +0.3
527,262 + -1.9
527,263 - -1.2
527,263 - -2.8
527,270 + +1.2
527,271 - -0.8
527,271 - +0.3
527,271 - -0.3
527,282 + -0.8
527,282 + +0.1
527,294 + MPMX19_03226 0.11 -0.4
527,320 + MPMX19_03226 0.20 -1.2
527,320 + MPMX19_03226 0.20 -1.2
527,320 + MPMX19_03226 0.20 -1.2
527,321 - MPMX19_03226 0.20 -1.8
527,321 - MPMX19_03226 0.20 -1.5
527,321 - MPMX19_03226 0.20 -1.8
527,381 - MPMX19_03226 0.41 -1.9
527,668 + -0.5
528,204 + -0.4
528,205 - +0.9
528,205 - -0.7
528,205 - -1.9
528,205 - -0.7
528,205 - -0.1
528,205 - +1.9
528,225 + MPMX19_03228 0.11 -0.6
528,225 + MPMX19_03228 0.11 +0.4
528,225 + MPMX19_03228 0.11 -2.2
528,225 + MPMX19_03228 0.11 -1.6
528,225 + MPMX19_03228 0.11 -1.3
528,225 + MPMX19_03228 0.11 -1.3
528,226 - MPMX19_03228 0.11 +1.5
528,226 - MPMX19_03228 0.11 +0.2
528,226 - MPMX19_03228 0.11 +0.9
528,226 - MPMX19_03228 0.11 +0.5
528,226 - MPMX19_03228 0.11 -1.1
528,226 - MPMX19_03228 0.11 -2.6
528,226 - MPMX19_03228 0.11 +0.4
528,226 - MPMX19_03228 0.11 +1.0
528,318 + MPMX19_03228 0.18 -0.6
528,318 + MPMX19_03228 0.18 -1.4
528,318 + MPMX19_03228 0.18 -1.0
528,318 + MPMX19_03228 0.18 +0.5
528,319 - MPMX19_03228 0.18 -0.6
528,319 - MPMX19_03228 0.18 +0.9
528,319 - MPMX19_03228 0.18 +2.1
528,333 + MPMX19_03228 0.19 -0.5
528,333 + MPMX19_03228 0.19 -0.1
528,333 + MPMX19_03228 0.19 +0.3
528,333 + MPMX19_03228 0.19 -1.2
528,333 + MPMX19_03228 0.19 -1.1
528,333 + MPMX19_03228 0.19 -0.5
528,333 + MPMX19_03228 0.19 -0.5
528,334 - MPMX19_03228 0.19 +0.3
528,334 - MPMX19_03228 0.19 +0.6
528,384 + MPMX19_03228 0.23 +0.3
528,384 + MPMX19_03228 0.23 -0.8
528,384 + MPMX19_03228 0.23 -1.1
528,384 + MPMX19_03228 0.23 +0.2
528,384 + MPMX19_03228 0.23 -1.5
528,385 - MPMX19_03228 0.23 -0.2
528,385 - MPMX19_03228 0.23 -1.3
528,412 - MPMX19_03228 0.25 -2.1
528,412 - MPMX19_03228 0.25 +1.1
528,412 - MPMX19_03228 0.25 -0.6
528,453 + MPMX19_03228 0.28 -1.4

Or see this region's nucleotide sequence