Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03105 and MPMX19_03106 are separated by 72 nucleotides MPMX19_03106 and MPMX19_03107 are separated by 5 nucleotides
MPMX19_03105: MPMX19_03105 - hypothetical protein, at 376,515 to 386,258
_03105
MPMX19_03106: MPMX19_03106 - hypothetical protein, at 386,331 to 387,962
_03106
MPMX19_03107: MPMX19_03107 - hypothetical protein, at 387,968 to 389,068
_03107
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 385.638 kb on + strand at 385.639 kb on - strand at 385.983 kb on + strand at 386.082 kb on + strand at 386.082 kb on + strand at 386.083 kb on - strand at 386.083 kb on - strand at 386.257 kb on - strand at 386.430 kb on + strand at 386.430 kb on + strand at 386.431 kb on - strand at 386.431 kb on - strand at 386.431 kb on - strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.490 kb on + strand at 386.491 kb on - strand at 386.491 kb on - strand at 386.491 kb on - strand at 386.491 kb on - strand at 386.491 kb on - strand at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.045 kb on + strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.046 kb on - strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.111 kb on + strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.112 kb on - strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.315 kb on + strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.316 kb on - strand, within MPMX19_03106 at 387.331 kb on - strand, within MPMX19_03106 at 387.331 kb on - strand, within MPMX19_03106 at 387.444 kb on + strand, within MPMX19_03106 at 387.848 kb on + strand at 387.849 kb on - strand at 387.940 kb on + strand at 387.940 kb on + strand at 387.940 kb on + strand at 387.940 kb on + strand at 387.940 kb on + strand at 387.940 kb on + strand at 387.941 kb on - strand at 387.941 kb on - strand at 387.941 kb on - strand at 387.941 kb on - strand at 387.941 kb on - strand at 388.193 kb on + strand, within MPMX19_03107 at 388.194 kb on - strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.211 kb on + strand, within MPMX19_03107 at 388.212 kb on - strand, within MPMX19_03107 at 388.212 kb on - strand, within MPMX19_03107 at 388.212 kb on - strand, within MPMX19_03107 at 388.212 kb on - strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.262 kb on + strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.263 kb on - strand, within MPMX19_03107 at 388.265 kb on - strand, within MPMX19_03107 at 388.265 kb on - strand, within MPMX19_03107 at 388.571 kb on + strand, within MPMX19_03107 at 388.572 kb on - strand, within MPMX19_03107 at 388.572 kb on - strand, within MPMX19_03107 at 388.739 kb on + strand, within MPMX19_03107 at 388.739 kb on + strand, within MPMX19_03107 at 388.739 kb on + strand, within MPMX19_03107 at 388.739 kb on + strand, within MPMX19_03107 at 388.739 kb on + strand, within MPMX19_03107 at 388.740 kb on - strand, within MPMX19_03107 at 388.740 kb on - strand, within MPMX19_03107 at 388.767 kb on - strand, within MPMX19_03107
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 385,638 + -0.1 385,639 - -0.9 385,983 + +0.6 386,082 + -2.4 386,082 + +0.4 386,083 - -1.6 386,083 - -0.5 386,257 - +0.2 386,430 + -0.7 386,430 + -0.4 386,431 - -0.5 386,431 - +2.2 386,431 - -0.0 386,490 + -1.6 386,490 + -1.4 386,490 + -0.1 386,490 + -0.0 386,490 + -0.1 386,490 + +2.1 386,490 + -0.1 386,491 - +0.8 386,491 - -1.7 386,491 - +0.4 386,491 - +0.4 386,491 - -1.1 387,045 + MPMX19_03106 0.44 -1.6 387,045 + MPMX19_03106 0.44 -2.1 387,045 + MPMX19_03106 0.44 -2.4 387,045 + MPMX19_03106 0.44 -1.1 387,045 + MPMX19_03106 0.44 -1.1 387,045 + MPMX19_03106 0.44 -1.4 387,045 + MPMX19_03106 0.44 -2.5 387,046 - MPMX19_03106 0.44 -1.0 387,046 - MPMX19_03106 0.44 -0.7 387,046 - MPMX19_03106 0.44 -1.7 387,046 - MPMX19_03106 0.44 -1.0 387,046 - MPMX19_03106 0.44 -1.3 387,046 - MPMX19_03106 0.44 +1.8 387,111 + MPMX19_03106 0.48 +1.1 387,111 + MPMX19_03106 0.48 -1.0 387,111 + MPMX19_03106 0.48 +0.8 387,111 + MPMX19_03106 0.48 -0.2 387,111 + MPMX19_03106 0.48 -0.6 387,111 + MPMX19_03106 0.48 -2.0 387,111 + MPMX19_03106 0.48 +0.1 387,111 + MPMX19_03106 0.48 -0.2 387,112 - MPMX19_03106 0.48 -0.9 387,112 - MPMX19_03106 0.48 -0.9 387,112 - MPMX19_03106 0.48 -0.2 387,112 - MPMX19_03106 0.48 -1.4 387,112 - MPMX19_03106 0.48 -0.8 387,112 - MPMX19_03106 0.48 -0.4 387,112 - MPMX19_03106 0.48 -0.9 387,315 + MPMX19_03106 0.60 +0.1 387,315 + MPMX19_03106 0.60 -0.7 387,315 + MPMX19_03106 0.60 +0.5 387,315 + MPMX19_03106 0.60 -0.3 387,315 + MPMX19_03106 0.60 -2.5 387,315 + MPMX19_03106 0.60 -1.3 387,315 + MPMX19_03106 0.60 -0.2 387,315 + MPMX19_03106 0.60 -1.4 387,315 + MPMX19_03106 0.60 -1.4 387,316 - MPMX19_03106 0.60 +0.8 387,316 - MPMX19_03106 0.60 -0.1 387,316 - MPMX19_03106 0.60 +0.4 387,316 - MPMX19_03106 0.60 -1.2 387,316 - MPMX19_03106 0.60 -1.5 387,316 - MPMX19_03106 0.60 +0.3 387,316 - MPMX19_03106 0.60 +1.0 387,316 - MPMX19_03106 0.60 +0.5 387,316 - MPMX19_03106 0.60 -0.7 387,316 - MPMX19_03106 0.60 -0.6 387,316 - MPMX19_03106 0.60 -1.0 387,316 - MPMX19_03106 0.60 -1.7 387,316 - MPMX19_03106 0.60 +0.2 387,331 - MPMX19_03106 0.61 +0.2 387,331 - MPMX19_03106 0.61 +1.6 387,444 + MPMX19_03106 0.68 -2.2 387,848 + -2.2 387,849 - -1.6 387,940 + -0.3 387,940 + +1.2 387,940 + -0.1 387,940 + -0.4 387,940 + -0.3 387,940 + +0.6 387,941 - -1.4 387,941 - -0.4 387,941 - -0.2 387,941 - +1.6 387,941 - -0.9 388,193 + MPMX19_03107 0.20 -0.2 388,194 - MPMX19_03107 0.21 -0.2 388,211 + MPMX19_03107 0.22 -0.7 388,211 + MPMX19_03107 0.22 +1.8 388,211 + MPMX19_03107 0.22 -1.3 388,211 + MPMX19_03107 0.22 -0.0 388,211 + MPMX19_03107 0.22 +0.6 388,211 + MPMX19_03107 0.22 +0.8 388,211 + MPMX19_03107 0.22 -0.1 388,212 - MPMX19_03107 0.22 -0.0 388,212 - MPMX19_03107 0.22 -0.8 388,212 - MPMX19_03107 0.22 +0.4 388,212 - MPMX19_03107 0.22 -1.2 388,262 + MPMX19_03107 0.27 -1.7 388,262 + MPMX19_03107 0.27 -0.9 388,262 + MPMX19_03107 0.27 -1.9 388,262 + MPMX19_03107 0.27 +0.2 388,262 + MPMX19_03107 0.27 +0.6 388,262 + MPMX19_03107 0.27 +0.4 388,262 + MPMX19_03107 0.27 -0.4 388,262 + MPMX19_03107 0.27 +1.2 388,263 - MPMX19_03107 0.27 -0.2 388,263 - MPMX19_03107 0.27 -0.9 388,263 - MPMX19_03107 0.27 -0.7 388,263 - MPMX19_03107 0.27 -2.0 388,263 - MPMX19_03107 0.27 +0.6 388,263 - MPMX19_03107 0.27 +1.3 388,263 - MPMX19_03107 0.27 +0.6 388,263 - MPMX19_03107 0.27 -0.7 388,265 - MPMX19_03107 0.27 -1.4 388,265 - MPMX19_03107 0.27 -0.3 388,571 + MPMX19_03107 0.55 +0.6 388,572 - MPMX19_03107 0.55 -0.3 388,572 - MPMX19_03107 0.55 -0.5 388,739 + MPMX19_03107 0.70 -1.1 388,739 + MPMX19_03107 0.70 -0.9 388,739 + MPMX19_03107 0.70 +0.4 388,739 + MPMX19_03107 0.70 -1.0 388,739 + MPMX19_03107 0.70 -0.5 388,740 - MPMX19_03107 0.70 +0.2 388,740 - MPMX19_03107 0.70 -1.5 388,767 - MPMX19_03107 0.73 -1.5
Or see this region's nucleotide sequence