Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03043 and MPMX19_03044 are separated by 72 nucleotides MPMX19_03044 and MPMX19_03045 are separated by 275 nucleotides MPMX19_03045 and MPMX19_03046 are separated by 35 nucleotides
MPMX19_03043: MPMX19_03043 - putative oxidoreductase YghA, at 309,005 to 309,907
_03043
MPMX19_03044: MPMX19_03044 - hypothetical protein, at 309,980 to 310,693
_03044
MPMX19_03045: MPMX19_03045 - hypothetical protein, at 310,969 to 311,631
_03045
MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819
_03046
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 309.053 kb on + strand at 309.054 kb on - strand at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.618 kb on - strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.876 kb on - strand at 309.876 kb on - strand at 309.876 kb on - strand at 309.905 kb on + strand at 309.905 kb on + strand at 309.906 kb on - strand at 309.906 kb on - strand at 310.065 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.733 kb on + strand at 310.736 kb on - strand at 310.760 kb on + strand at 310.760 kb on + strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.856 kb on - strand at 310.897 kb on - strand at 311.000 kb on + strand at 311.000 kb on + strand at 311.001 kb on - strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.003 kb on - strand at 311.101 kb on + strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.273 kb on + strand, within MPMX19_03045 at 311.377 kb on - strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.593 kb on - strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.595 kb on - strand at 311.629 kb on + strand at 311.630 kb on - strand at 311.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 309,053 + -0.5 309,054 - -0.5 309,143 + MPMX19_03043 0.15 +0.0 309,143 + MPMX19_03043 0.15 +0.9 309,143 + MPMX19_03043 0.15 +0.8 309,143 + MPMX19_03043 0.15 -0.1 309,143 + MPMX19_03043 0.15 -0.3 309,143 + MPMX19_03043 0.15 +1.1 309,144 - MPMX19_03043 0.15 -2.0 309,144 - MPMX19_03043 0.15 +0.0 309,144 - MPMX19_03043 0.15 -1.1 309,144 - MPMX19_03043 0.15 -0.9 309,144 - MPMX19_03043 0.15 +0.0 309,144 - MPMX19_03043 0.15 +0.7 309,144 - MPMX19_03043 0.15 -0.4 309,144 - MPMX19_03043 0.15 -1.9 309,144 - MPMX19_03043 0.15 +0.6 309,144 - MPMX19_03043 0.15 +0.4 309,227 + MPMX19_03043 0.25 +0.0 309,227 + MPMX19_03043 0.25 -0.7 309,228 - MPMX19_03043 0.25 -1.2 309,228 - MPMX19_03043 0.25 -1.7 309,506 + MPMX19_03043 0.55 -0.4 309,506 + MPMX19_03043 0.55 +0.5 309,506 + MPMX19_03043 0.55 -0.3 309,506 + MPMX19_03043 0.55 -1.5 309,506 + MPMX19_03043 0.55 -3.8 309,506 + MPMX19_03043 0.55 -0.4 309,506 + MPMX19_03043 0.55 -0.5 309,506 + MPMX19_03043 0.55 -1.7 309,506 + MPMX19_03043 0.55 +0.1 309,506 + MPMX19_03043 0.55 -0.4 309,507 - MPMX19_03043 0.56 +0.7 309,507 - MPMX19_03043 0.56 +0.9 309,507 - MPMX19_03043 0.56 -2.6 309,507 - MPMX19_03043 0.56 -0.5 309,507 - MPMX19_03043 0.56 +0.6 309,507 - MPMX19_03043 0.56 -0.8 309,507 - MPMX19_03043 0.56 -1.6 309,507 - MPMX19_03043 0.56 +0.1 309,507 - MPMX19_03043 0.56 -1.0 309,507 - MPMX19_03043 0.56 -0.8 309,507 - MPMX19_03043 0.56 -0.2 309,507 - MPMX19_03043 0.56 -0.3 309,590 + MPMX19_03043 0.65 -1.0 309,590 + MPMX19_03043 0.65 -0.4 309,590 + MPMX19_03043 0.65 +1.0 309,590 + MPMX19_03043 0.65 +0.2 309,591 - MPMX19_03043 0.65 +0.6 309,591 - MPMX19_03043 0.65 +1.3 309,591 - MPMX19_03043 0.65 -1.5 309,591 - MPMX19_03043 0.65 +0.0 309,611 + MPMX19_03043 0.67 -2.9 309,611 + MPMX19_03043 0.67 -0.7 309,611 + MPMX19_03043 0.67 -0.7 309,611 + MPMX19_03043 0.67 -0.7 309,611 + MPMX19_03043 0.67 -0.4 309,611 + MPMX19_03043 0.67 -1.7 309,611 + MPMX19_03043 0.67 +0.8 309,611 + MPMX19_03043 0.67 -0.3 309,611 + MPMX19_03043 0.67 -1.3 309,612 - MPMX19_03043 0.67 -0.3 309,612 - MPMX19_03043 0.67 -0.7 309,612 - MPMX19_03043 0.67 +0.0 309,617 + MPMX19_03043 0.68 +0.2 309,617 + MPMX19_03043 0.68 -1.9 309,617 + MPMX19_03043 0.68 -3.9 309,617 + MPMX19_03043 0.68 -0.2 309,617 + MPMX19_03043 0.68 -1.6 309,617 + MPMX19_03043 0.68 -0.2 309,618 - MPMX19_03043 0.68 -0.8 309,647 + MPMX19_03043 0.71 +0.1 309,647 + MPMX19_03043 0.71 -1.0 309,647 + MPMX19_03043 0.71 +0.5 309,647 + MPMX19_03043 0.71 -0.7 309,647 + MPMX19_03043 0.71 -1.6 309,647 + MPMX19_03043 0.71 -0.4 309,648 - MPMX19_03043 0.71 -0.1 309,648 - MPMX19_03043 0.71 -0.4 309,648 - MPMX19_03043 0.71 +2.6 309,648 - MPMX19_03043 0.71 -1.6 309,648 - MPMX19_03043 0.71 +1.3 309,648 - MPMX19_03043 0.71 +1.1 309,648 - MPMX19_03043 0.71 +0.6 309,648 - MPMX19_03043 0.71 -2.6 309,648 - MPMX19_03043 0.71 +1.3 309,648 - MPMX19_03043 0.71 -0.1 309,827 + +2.1 309,827 + -0.6 309,827 + -1.0 309,827 + +0.9 309,827 + -0.5 309,827 + -0.7 309,827 + -0.5 309,827 + -0.4 309,827 + -0.7 309,827 + +1.6 309,827 + +0.8 309,827 + -0.1 309,827 + -0.8 309,827 + -1.6 309,827 + -1.4 309,828 - -0.3 309,828 - +0.3 309,828 - -1.7 309,828 - -0.0 309,828 - -1.3 309,828 - -0.4 309,828 - -0.5 309,828 - +0.4 309,828 - +0.3 309,828 - +0.0 309,828 - +0.4 309,828 - -0.4 309,828 - -2.4 309,828 - +0.4 309,828 - -1.4 309,828 - -2.9 309,828 - +0.3 309,828 - -2.0 309,828 - -0.8 309,828 - -0.9 309,828 - -0.3 309,875 + -1.7 309,875 + -1.5 309,875 + -0.2 309,875 + -0.2 309,876 - +0.4 309,876 - -1.4 309,876 - -0.6 309,905 + +0.5 309,905 + +0.4 309,906 - -0.1 309,906 - -1.6 310,065 + MPMX19_03044 0.12 -2.2 310,190 + MPMX19_03044 0.29 +0.6 310,190 + MPMX19_03044 0.29 +0.0 310,190 + MPMX19_03044 0.29 -0.1 310,191 - MPMX19_03044 0.30 +1.0 310,191 - MPMX19_03044 0.30 -0.9 310,191 - MPMX19_03044 0.30 +0.5 310,191 - MPMX19_03044 0.30 +1.0 310,191 - MPMX19_03044 0.30 +0.4 310,482 + MPMX19_03044 0.70 +0.1 310,482 + MPMX19_03044 0.70 -1.6 310,485 + MPMX19_03044 0.71 -0.3 310,485 + MPMX19_03044 0.71 -0.6 310,485 + MPMX19_03044 0.71 -0.2 310,485 + MPMX19_03044 0.71 -1.5 310,733 + -0.6 310,736 - -0.5 310,760 + +0.6 310,760 + +0.9 310,761 - +0.0 310,761 - -1.9 310,761 - +1.2 310,761 - -0.3 310,856 - +0.5 310,897 - -0.5 311,000 + -0.1 311,000 + -0.4 311,001 - -1.9 311,002 + +0.4 311,002 + +1.6 311,002 + -1.2 311,002 + -0.4 311,002 + +1.6 311,002 + -1.5 311,002 + -0.7 311,002 + -0.7 311,002 + +0.6 311,002 + -0.5 311,003 - +0.2 311,101 + MPMX19_03045 0.20 -2.3 311,102 - MPMX19_03045 0.20 -0.7 311,102 - MPMX19_03045 0.20 +0.8 311,102 - MPMX19_03045 0.20 -1.9 311,273 + MPMX19_03045 0.46 -0.4 311,377 - MPMX19_03045 0.62 +0.3 311,401 + MPMX19_03045 0.65 +0.3 311,401 + MPMX19_03045 0.65 -1.6 311,401 + MPMX19_03045 0.65 -0.4 311,401 + MPMX19_03045 0.65 +0.6 311,401 + MPMX19_03045 0.65 -0.7 311,401 + MPMX19_03045 0.65 +0.6 311,401 + MPMX19_03045 0.65 +0.2 311,402 - MPMX19_03045 0.65 +0.6 311,402 - MPMX19_03045 0.65 -1.1 311,402 - MPMX19_03045 0.65 +0.2 311,402 - MPMX19_03045 0.65 +0.0 311,542 + MPMX19_03045 0.86 +0.5 311,542 + MPMX19_03045 0.86 -0.4 311,542 + MPMX19_03045 0.86 -1.7 311,542 + MPMX19_03045 0.86 -0.2 311,542 + MPMX19_03045 0.86 -0.2 311,543 - MPMX19_03045 0.87 -0.5 311,543 - MPMX19_03045 0.87 -0.4 311,543 - MPMX19_03045 0.87 +1.3 311,543 - MPMX19_03045 0.87 +0.7 311,543 - MPMX19_03045 0.87 +1.0 311,593 - -2.2 311,594 + -0.7 311,594 + -1.6 311,594 + -0.2 311,594 + -0.1 311,594 + -3.0 311,594 + -0.0 311,594 + -1.7 311,595 - +0.2 311,629 + -2.1 311,630 - -0.7 311,630 - -1.6
Or see this region's nucleotide sequence