Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02897 and MPMX19_02898 overlap by 14 nucleotides MPMX19_02898 and MPMX19_02899 are separated by 505 nucleotides
MPMX19_02897: MPMX19_02897 - hypothetical protein, at 151,836 to 152,960
_02897
MPMX19_02898: MPMX19_02898 - hypothetical protein, at 152,947 to 154,317
_02898
MPMX19_02899: MPMX19_02899 - hypothetical protein, at 154,823 to 155,476
_02899
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.257 kb on + strand, within MPMX19_02897 at 152.258 kb on - strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.518 kb on + strand, within MPMX19_02897 at 152.519 kb on - strand, within MPMX19_02897 at 152.696 kb on - strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.762 kb on - strand, within MPMX19_02897 at 152.776 kb on + strand, within MPMX19_02897 at 152.872 kb on + strand at 152.873 kb on - strand at 152.873 kb on - strand at 152.873 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.592 kb on - strand, within MPMX19_02898 at 153.592 kb on - strand, within MPMX19_02898 at 153.852 kb on - strand, within MPMX19_02898 at 153.868 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.945 kb on - strand, within MPMX19_02898 at 154.026 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.061 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.197 kb on + strand at 154.197 kb on + strand at 154.197 kb on + strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.383 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.494 kb on - strand at 154.610 kb on + strand at 154.610 kb on + strand at 154.611 kb on - strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 152,212 + MPMX19_02897 0.33 +0.2 152,212 + MPMX19_02897 0.33 +0.2 152,212 + MPMX19_02897 0.33 +2.4 152,212 + MPMX19_02897 0.33 -1.3 152,212 + MPMX19_02897 0.33 -2.5 152,212 + MPMX19_02897 0.33 -1.6 152,212 + MPMX19_02897 0.33 +0.6 152,212 + MPMX19_02897 0.33 -1.8 152,212 + MPMX19_02897 0.33 +0.4 152,212 + MPMX19_02897 0.33 -1.0 152,213 - MPMX19_02897 0.34 -2.0 152,213 - MPMX19_02897 0.34 -0.0 152,213 - MPMX19_02897 0.34 -1.0 152,213 - MPMX19_02897 0.34 -3.1 152,257 + MPMX19_02897 0.37 +2.2 152,258 - MPMX19_02897 0.38 +0.3 152,466 + MPMX19_02897 0.56 -0.4 152,466 + MPMX19_02897 0.56 -2.5 152,466 + MPMX19_02897 0.56 +1.0 152,466 + MPMX19_02897 0.56 -0.6 152,466 + MPMX19_02897 0.56 -0.4 152,466 + MPMX19_02897 0.56 +0.4 152,466 + MPMX19_02897 0.56 -0.6 152,467 - MPMX19_02897 0.56 +0.7 152,467 - MPMX19_02897 0.56 +0.2 152,467 - MPMX19_02897 0.56 -1.4 152,467 - MPMX19_02897 0.56 -0.2 152,467 - MPMX19_02897 0.56 -0.5 152,467 - MPMX19_02897 0.56 +0.4 152,518 + MPMX19_02897 0.61 +1.1 152,519 - MPMX19_02897 0.61 -0.0 152,696 - MPMX19_02897 0.76 -2.6 152,761 + MPMX19_02897 0.82 -1.2 152,761 + MPMX19_02897 0.82 +0.8 152,761 + MPMX19_02897 0.82 +0.8 152,762 - MPMX19_02897 0.82 -0.7 152,776 + MPMX19_02897 0.84 -2.2 152,872 + -2.9 152,873 - -0.5 152,873 - +0.2 152,873 - -0.2 152,943 - -0.3 152,943 - -0.4 153,030 - +2.6 153,030 - -1.5 153,030 - +0.8 153,030 - +0.5 153,030 - -0.3 153,591 + MPMX19_02898 0.47 -3.1 153,591 + MPMX19_02898 0.47 -0.1 153,591 + MPMX19_02898 0.47 +0.2 153,591 + MPMX19_02898 0.47 -0.4 153,591 + MPMX19_02898 0.47 -0.6 153,591 + MPMX19_02898 0.47 -1.4 153,592 - MPMX19_02898 0.47 -0.3 153,592 - MPMX19_02898 0.47 -2.8 153,852 - MPMX19_02898 0.66 +1.0 153,868 + MPMX19_02898 0.67 -0.0 153,887 + MPMX19_02898 0.69 -2.7 153,887 + MPMX19_02898 0.69 -1.0 153,887 + MPMX19_02898 0.69 -1.1 153,887 + MPMX19_02898 0.69 +0.2 153,887 + MPMX19_02898 0.69 +1.1 153,887 + MPMX19_02898 0.69 -1.4 153,887 + MPMX19_02898 0.69 -0.0 153,887 + MPMX19_02898 0.69 -0.2 153,888 - MPMX19_02898 0.69 +0.3 153,888 - MPMX19_02898 0.69 -0.8 153,944 + MPMX19_02898 0.73 +0.8 153,944 + MPMX19_02898 0.73 +0.6 153,945 - MPMX19_02898 0.73 -0.0 154,026 + MPMX19_02898 0.79 +0.4 154,060 + MPMX19_02898 0.81 -0.4 154,060 + MPMX19_02898 0.81 +0.7 154,060 + MPMX19_02898 0.81 -2.9 154,061 - MPMX19_02898 0.81 -0.6 154,098 - MPMX19_02898 0.84 -0.6 154,098 - MPMX19_02898 0.84 -0.0 154,112 + MPMX19_02898 0.85 -2.1 154,112 + MPMX19_02898 0.85 +0.4 154,112 + MPMX19_02898 0.85 -0.3 154,197 + +0.8 154,197 + +0.6 154,197 + +0.4 154,198 - -1.4 154,198 - +0.2 154,198 - -2.1 154,198 - -1.1 154,383 + +0.6 154,453 + -0.3 154,453 + -1.4 154,453 + -0.4 154,453 + +0.8 154,453 + -1.1 154,453 + -1.0 154,453 + -0.7 154,453 + -0.3 154,454 - +0.3 154,454 - +0.8 154,454 - -1.7 154,454 - -0.0 154,454 - -0.0 154,454 - -1.2 154,493 + +0.8 154,494 - -0.7 154,494 - +0.4 154,610 + -0.7 154,610 + -0.5 154,611 - -0.9 154,874 + +0.9 154,874 + -0.5 154,874 + -0.0 154,874 + +0.7 154,874 + -2.7 154,874 + +0.6 154,874 + +0.8 154,874 + +0.1 154,874 + -1.4 154,874 + +0.3 154,875 - +1.1 154,875 - -0.4 154,875 - +0.6 154,875 - -2.1 154,875 - -1.4 154,875 - +1.4 154,875 - +1.9 154,875 - +1.4 154,875 - -0.5 154,875 - -1.6 154,937 + MPMX19_02899 0.17 +0.3 154,937 + MPMX19_02899 0.17 -0.4 154,937 + MPMX19_02899 0.17 -0.4 154,937 + MPMX19_02899 0.17 +0.2 154,937 + MPMX19_02899 0.17 -0.1 154,937 + MPMX19_02899 0.17 -0.5 154,937 + MPMX19_02899 0.17 -0.0 154,937 + MPMX19_02899 0.17 -2.0 154,937 + MPMX19_02899 0.17 -2.4 154,938 - MPMX19_02899 0.18 -1.9 154,938 - MPMX19_02899 0.18 -1.2 154,938 - MPMX19_02899 0.18 -2.9 154,938 - MPMX19_02899 0.18 -0.5 154,938 - MPMX19_02899 0.18 -0.4 154,938 - MPMX19_02899 0.18 -1.9 154,938 - MPMX19_02899 0.18 +1.6 154,938 - MPMX19_02899 0.18 -0.4 155,032 + MPMX19_02899 0.32 -0.6 155,032 + MPMX19_02899 0.32 -0.1 155,032 + MPMX19_02899 0.32 -0.7 155,032 + MPMX19_02899 0.32 -1.7 155,033 - MPMX19_02899 0.32 -1.0 155,033 - MPMX19_02899 0.32 -0.6 155,033 - MPMX19_02899 0.32 +0.7 155,033 - MPMX19_02899 0.32 -0.1 155,033 - MPMX19_02899 0.32 +0.2 155,033 - MPMX19_02899 0.32 -0.6 155,033 - MPMX19_02899 0.32 +1.3 155,195 + MPMX19_02899 0.57 -0.3 155,195 + MPMX19_02899 0.57 -0.2 155,196 - MPMX19_02899 0.57 -2.7 155,196 - MPMX19_02899 0.57 +0.6 155,196 - MPMX19_02899 0.57 -0.2 155,196 - MPMX19_02899 0.57 -0.2
Or see this region's nucleotide sequence