Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02806 and MPMX19_02807 are separated by 64 nucleotides MPMX19_02807 and MPMX19_02808 are separated by 98 nucleotides
MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104
_02806
MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698
_02807
MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573
_02808
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.233 kb on - strand, within MPMX19_02806 at 41.389 kb on - strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.778 kb on + strand, within MPMX19_02806 at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.103 kb on - strand at 42.103 kb on - strand at 42.138 kb on + strand at 42.138 kb on + strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.214 kb on + strand at 42.214 kb on + strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.554 kb on - strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.737 kb on - strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.196 kb on - strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.252 kb on + strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.555 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 44.439 kb on + strand, within MPMX19_02808 at 44.571 kb on + strand at 44.650 kb on + strand at 44.670 kb on + strand at 44.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 41,233 - MPMX19_02806 0.14 -2.5 41,389 - MPMX19_02806 0.30 -0.4 41,532 + MPMX19_02806 0.44 -2.3 41,532 + MPMX19_02806 0.44 -0.5 41,533 - MPMX19_02806 0.44 -0.2 41,533 - MPMX19_02806 0.44 +1.2 41,778 + MPMX19_02806 0.68 +0.3 42,006 + +1.9 42,006 + -0.7 42,006 + +2.1 42,006 + -0.5 42,006 + -0.1 42,006 + -0.2 42,007 - -0.4 42,007 - -1.2 42,007 - -0.4 42,007 - +1.8 42,102 + -0.3 42,102 + -1.6 42,102 + -0.9 42,103 - +0.5 42,103 - -1.7 42,138 + -1.7 42,138 + -1.0 42,139 - +0.4 42,139 - -0.6 42,139 - +0.8 42,139 - -0.4 42,139 - +0.3 42,139 - -1.1 42,139 - -1.5 42,139 - -0.9 42,139 - +0.7 42,139 - +0.7 42,184 + -1.6 42,184 + -0.9 42,184 + -0.0 42,184 + -0.1 42,184 + -0.8 42,184 + +0.7 42,184 + +0.4 42,184 + +0.7 42,185 - -0.7 42,185 - -0.5 42,185 - -1.7 42,185 - -1.4 42,214 + +1.3 42,214 + -1.0 42,215 - +1.8 42,215 - -0.3 42,215 - -1.4 42,215 - -1.2 42,215 - -1.4 42,215 - -1.5 42,337 + MPMX19_02807 0.11 +0.4 42,337 + MPMX19_02807 0.11 -1.9 42,337 + MPMX19_02807 0.11 -0.6 42,553 + MPMX19_02807 0.25 -0.7 42,553 + MPMX19_02807 0.25 -2.0 42,553 + MPMX19_02807 0.25 -0.5 42,553 + MPMX19_02807 0.25 +0.6 42,553 + MPMX19_02807 0.25 -0.7 42,553 + MPMX19_02807 0.25 +0.8 42,553 + MPMX19_02807 0.25 -1.1 42,553 + MPMX19_02807 0.25 -1.0 42,554 - MPMX19_02807 0.25 -1.4 42,607 + MPMX19_02807 0.29 -0.9 42,607 + MPMX19_02807 0.29 -1.0 42,607 + MPMX19_02807 0.29 -0.0 42,607 + MPMX19_02807 0.29 -2.2 42,607 + MPMX19_02807 0.29 +0.4 42,607 + MPMX19_02807 0.29 -0.8 42,607 + MPMX19_02807 0.29 -0.0 42,607 + MPMX19_02807 0.29 -0.9 42,608 - MPMX19_02807 0.29 -0.4 42,608 - MPMX19_02807 0.29 +0.7 42,608 - MPMX19_02807 0.29 -1.1 42,736 + MPMX19_02807 0.37 -0.8 42,736 + MPMX19_02807 0.37 +2.0 42,736 + MPMX19_02807 0.37 -0.7 42,737 - MPMX19_02807 0.37 -0.7 43,036 + MPMX19_02807 0.57 +0.2 43,036 + MPMX19_02807 0.57 -0.3 43,037 - MPMX19_02807 0.57 +0.4 43,037 - MPMX19_02807 0.57 -0.7 43,196 - MPMX19_02807 0.67 -1.2 43,246 + MPMX19_02807 0.70 -0.8 43,246 + MPMX19_02807 0.70 +0.6 43,246 + MPMX19_02807 0.70 -0.2 43,246 + MPMX19_02807 0.70 -1.0 43,246 + MPMX19_02807 0.70 +0.6 43,246 + MPMX19_02807 0.70 -0.4 43,246 + MPMX19_02807 0.70 -0.2 43,247 - MPMX19_02807 0.70 -0.5 43,247 - MPMX19_02807 0.70 +0.4 43,247 - MPMX19_02807 0.70 -1.7 43,252 + MPMX19_02807 0.71 -0.1 43,253 - MPMX19_02807 0.71 -2.0 43,253 - MPMX19_02807 0.71 -0.4 43,402 + MPMX19_02807 0.81 -2.2 43,402 + MPMX19_02807 0.81 -0.3 43,402 + MPMX19_02807 0.81 -0.6 43,403 - MPMX19_02807 0.81 -1.0 43,403 - MPMX19_02807 0.81 -1.4 43,403 - MPMX19_02807 0.81 +0.9 43,403 - MPMX19_02807 0.81 -1.0 43,403 - MPMX19_02807 0.81 -2.8 43,403 - MPMX19_02807 0.81 +0.2 43,403 - MPMX19_02807 0.81 -0.2 43,555 + -0.4 43,737 + +0.8 43,737 + +0.2 43,737 + -0.7 44,439 + MPMX19_02808 0.83 -0.6 44,571 + -1.2 44,650 + -1.1 44,670 + -0.3 44,678 + +0.8
Or see this region's nucleotide sequence