Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02664

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02662 and MPMX19_02663 are separated by 121 nucleotidesMPMX19_02663 and MPMX19_02664 are separated by 195 nucleotidesMPMX19_02664 and MPMX19_02665 are separated by 52 nucleotidesMPMX19_02665 and MPMX19_02666 overlap by 4 nucleotides MPMX19_02662: MPMX19_02662 - tRNA-Leu, at 2,782,787 to 2,782,873 _02662 MPMX19_02663: MPMX19_02663 - Ribonuclease D, at 2,782,995 to 2,783,621 _02663 MPMX19_02664: MPMX19_02664 - Arabinose 5-phosphate isomerase KdsD, at 2,783,817 to 2,784,860 _02664 MPMX19_02665: MPMX19_02665 - Lipopolysaccharide export system protein LptC, at 2,784,913 to 2,785,680 _02665 MPMX19_02666: MPMX19_02666 - LPS-assembly protein LptD, at 2,785,677 to 2,786,573 _02666 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -1 0 1at 2782.882 kb on + strandat 2782.953 kb on + strandat 2782.953 kb on + strandat 2782.953 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2783.723 kb on + strandat 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664at 2784.512 kb on + strand, within MPMX19_02664

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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2,782,882 + -0.6
2,782,953 + -0.4
2,782,953 + -0.2
2,782,953 + -0.5
2,783,723 + -1.3
2,783,723 + +1.5
2,783,723 + -0.5
2,783,723 + -0.2
2,783,723 + +0.0
2,783,723 + -0.3
2,783,723 + -0.7
2,784,512 + MPMX19_02664 0.67 +1.0
2,784,512 + MPMX19_02664 0.67 +0.1
2,784,512 + MPMX19_02664 0.67 -0.1
2,784,512 + MPMX19_02664 0.67 -0.9
2,784,512 + MPMX19_02664 0.67 +0.1
2,784,512 + MPMX19_02664 0.67 -0.6
2,784,512 + MPMX19_02664 0.67 -0.6
2,784,512 + MPMX19_02664 0.67 -0.6

Or see this region's nucleotide sequence