Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00784 and MPMX19_00785 are separated by 485 nucleotides MPMX19_00785 and MPMX19_00786 are separated by 234 nucleotides
MPMX19_00784: MPMX19_00784 - Biotin carboxylase, at 802,154 to 803,494
_00784
MPMX19_00785: MPMX19_00785 - hypothetical protein, at 803,980 to 806,463
_00785
MPMX19_00786: MPMX19_00786 - Adaptive-response sensory-kinase SasA, at 806,698 to 808,338
_00786
Position (kb) 803
804
805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 803.653 kb on - strand at 803.744 kb on + strand at 803.826 kb on + strand at 803.835 kb on + strand at 803.835 kb on + strand at 803.835 kb on + strand at 803.836 kb on - strand at 803.836 kb on - strand at 803.836 kb on - strand at 803.836 kb on - strand at 803.836 kb on - strand at 803.836 kb on - strand at 803.856 kb on - strand at 803.856 kb on - strand at 803.856 kb on - strand at 803.856 kb on - strand at 804.106 kb on + strand at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.256 kb on + strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.257 kb on - strand, within MPMX19_00785 at 804.367 kb on + strand, within MPMX19_00785 at 804.368 kb on - strand, within MPMX19_00785 at 804.368 kb on - strand, within MPMX19_00785 at 804.368 kb on - strand, within MPMX19_00785 at 804.368 kb on - strand, within MPMX19_00785 at 804.368 kb on - strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.580 kb on + strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.581 kb on - strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.591 kb on + strand, within MPMX19_00785 at 804.592 kb on - strand, within MPMX19_00785 at 804.592 kb on - strand, within MPMX19_00785 at 804.592 kb on - strand, within MPMX19_00785 at 804.592 kb on - strand, within MPMX19_00785 at 804.592 kb on - strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.630 kb on + strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.631 kb on - strand, within MPMX19_00785 at 804.763 kb on + strand, within MPMX19_00785 at 804.763 kb on + strand, within MPMX19_00785 at 804.763 kb on + strand, within MPMX19_00785 at 804.763 kb on + strand, within MPMX19_00785 at 804.763 kb on + strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.764 kb on - strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.994 kb on + strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 804.995 kb on - strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.243 kb on + strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.244 kb on - strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 806.317 kb on + strand at 806.516 kb on + strand at 806.516 kb on + strand at 806.517 kb on - strand at 806.517 kb on - strand at 806.549 kb on + strand at 806.550 kb on - strand at 806.597 kb on + strand at 806.597 kb on + strand at 806.597 kb on + strand at 806.598 kb on - strand at 806.651 kb on + strand at 806.651 kb on + strand at 806.652 kb on - strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 807.016 kb on + strand, within MPMX19_00786 at 807.165 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 803,653 - -1.5 803,744 + -0.5 803,826 + -1.7 803,835 + -1.1 803,835 + -1.5 803,835 + -0.7 803,836 - -0.7 803,836 - +1.2 803,836 - -1.0 803,836 - +0.3 803,836 - +0.2 803,836 - -2.1 803,856 - +0.4 803,856 - -0.8 803,856 - +0.0 803,856 - -0.5 804,106 + +0.1 804,256 + MPMX19_00785 0.11 -0.4 804,256 + MPMX19_00785 0.11 -0.4 804,256 + MPMX19_00785 0.11 -2.1 804,256 + MPMX19_00785 0.11 -0.8 804,256 + MPMX19_00785 0.11 -1.3 804,256 + MPMX19_00785 0.11 -1.6 804,256 + MPMX19_00785 0.11 -0.5 804,256 + MPMX19_00785 0.11 -0.4 804,256 + MPMX19_00785 0.11 -2.3 804,256 + MPMX19_00785 0.11 +0.6 804,256 + MPMX19_00785 0.11 -1.5 804,256 + MPMX19_00785 0.11 -0.7 804,256 + MPMX19_00785 0.11 -0.1 804,256 + MPMX19_00785 0.11 -0.1 804,256 + MPMX19_00785 0.11 -0.1 804,256 + MPMX19_00785 0.11 -0.9 804,257 - MPMX19_00785 0.11 -0.1 804,257 - MPMX19_00785 0.11 +0.4 804,257 - MPMX19_00785 0.11 -0.6 804,257 - MPMX19_00785 0.11 -0.5 804,257 - MPMX19_00785 0.11 +0.1 804,257 - MPMX19_00785 0.11 -0.2 804,257 - MPMX19_00785 0.11 +0.5 804,257 - MPMX19_00785 0.11 -2.7 804,257 - MPMX19_00785 0.11 +0.0 804,257 - MPMX19_00785 0.11 +0.4 804,257 - MPMX19_00785 0.11 -0.3 804,257 - MPMX19_00785 0.11 -0.5 804,257 - MPMX19_00785 0.11 -0.8 804,257 - MPMX19_00785 0.11 +0.5 804,367 + MPMX19_00785 0.16 +0.4 804,368 - MPMX19_00785 0.16 +0.2 804,368 - MPMX19_00785 0.16 +0.1 804,368 - MPMX19_00785 0.16 -1.1 804,368 - MPMX19_00785 0.16 -0.1 804,368 - MPMX19_00785 0.16 -0.3 804,580 + MPMX19_00785 0.24 -0.2 804,580 + MPMX19_00785 0.24 -0.1 804,580 + MPMX19_00785 0.24 +0.1 804,580 + MPMX19_00785 0.24 -0.2 804,580 + MPMX19_00785 0.24 +0.5 804,580 + MPMX19_00785 0.24 -0.1 804,580 + MPMX19_00785 0.24 -1.4 804,580 + MPMX19_00785 0.24 -1.8 804,580 + MPMX19_00785 0.24 +0.5 804,581 - MPMX19_00785 0.24 +0.5 804,581 - MPMX19_00785 0.24 -0.4 804,581 - MPMX19_00785 0.24 -0.5 804,581 - MPMX19_00785 0.24 +0.4 804,581 - MPMX19_00785 0.24 -0.4 804,581 - MPMX19_00785 0.24 -0.2 804,581 - MPMX19_00785 0.24 +0.3 804,581 - MPMX19_00785 0.24 -0.6 804,581 - MPMX19_00785 0.24 +1.8 804,581 - MPMX19_00785 0.24 -0.3 804,591 + MPMX19_00785 0.25 -2.1 804,591 + MPMX19_00785 0.25 -2.1 804,591 + MPMX19_00785 0.25 -0.4 804,591 + MPMX19_00785 0.25 -2.9 804,591 + MPMX19_00785 0.25 -0.0 804,591 + MPMX19_00785 0.25 -0.7 804,592 - MPMX19_00785 0.25 -1.8 804,592 - MPMX19_00785 0.25 -0.2 804,592 - MPMX19_00785 0.25 -0.2 804,592 - MPMX19_00785 0.25 +1.0 804,592 - MPMX19_00785 0.25 -1.5 804,630 + MPMX19_00785 0.26 -3.0 804,630 + MPMX19_00785 0.26 -0.4 804,630 + MPMX19_00785 0.26 +1.5 804,630 + MPMX19_00785 0.26 -0.6 804,630 + MPMX19_00785 0.26 +1.4 804,630 + MPMX19_00785 0.26 -0.7 804,630 + MPMX19_00785 0.26 +0.1 804,630 + MPMX19_00785 0.26 +0.4 804,630 + MPMX19_00785 0.26 -2.4 804,630 + MPMX19_00785 0.26 +0.0 804,630 + MPMX19_00785 0.26 +2.1 804,630 + MPMX19_00785 0.26 +0.7 804,631 - MPMX19_00785 0.26 -1.7 804,631 - MPMX19_00785 0.26 +1.1 804,631 - MPMX19_00785 0.26 -1.1 804,631 - MPMX19_00785 0.26 -0.5 804,631 - MPMX19_00785 0.26 -0.1 804,631 - MPMX19_00785 0.26 -1.1 804,631 - MPMX19_00785 0.26 +1.1 804,631 - MPMX19_00785 0.26 +0.2 804,631 - MPMX19_00785 0.26 -1.7 804,631 - MPMX19_00785 0.26 -0.8 804,631 - MPMX19_00785 0.26 +0.2 804,763 + MPMX19_00785 0.32 +0.1 804,763 + MPMX19_00785 0.32 -1.7 804,763 + MPMX19_00785 0.32 -1.8 804,763 + MPMX19_00785 0.32 +0.0 804,763 + MPMX19_00785 0.32 -0.6 804,764 - MPMX19_00785 0.32 -0.2 804,764 - MPMX19_00785 0.32 -1.0 804,764 - MPMX19_00785 0.32 +1.5 804,764 - MPMX19_00785 0.32 +0.1 804,764 - MPMX19_00785 0.32 +0.4 804,764 - MPMX19_00785 0.32 +2.1 804,764 - MPMX19_00785 0.32 +0.5 804,764 - MPMX19_00785 0.32 -1.3 804,764 - MPMX19_00785 0.32 -1.6 804,994 + MPMX19_00785 0.41 -1.6 804,994 + MPMX19_00785 0.41 +0.4 804,994 + MPMX19_00785 0.41 +0.5 804,994 + MPMX19_00785 0.41 +0.1 804,994 + MPMX19_00785 0.41 +2.1 804,994 + MPMX19_00785 0.41 -0.4 804,994 + MPMX19_00785 0.41 -1.8 804,994 + MPMX19_00785 0.41 +0.9 804,994 + MPMX19_00785 0.41 +0.9 804,994 + MPMX19_00785 0.41 +0.3 804,994 + MPMX19_00785 0.41 -1.7 804,994 + MPMX19_00785 0.41 -0.8 804,994 + MPMX19_00785 0.41 -0.5 804,994 + MPMX19_00785 0.41 +0.7 804,994 + MPMX19_00785 0.41 -0.0 804,994 + MPMX19_00785 0.41 +0.1 804,995 - MPMX19_00785 0.41 -1.5 804,995 - MPMX19_00785 0.41 -0.8 804,995 - MPMX19_00785 0.41 -0.1 804,995 - MPMX19_00785 0.41 -0.3 804,995 - MPMX19_00785 0.41 -0.8 804,995 - MPMX19_00785 0.41 -1.2 804,995 - MPMX19_00785 0.41 -0.3 804,995 - MPMX19_00785 0.41 -0.1 804,995 - MPMX19_00785 0.41 +0.2 804,995 - MPMX19_00785 0.41 -0.3 804,995 - MPMX19_00785 0.41 -0.3 804,995 - MPMX19_00785 0.41 +0.3 804,995 - MPMX19_00785 0.41 +2.3 804,995 - MPMX19_00785 0.41 -0.5 804,995 - MPMX19_00785 0.41 -0.6 804,995 - MPMX19_00785 0.41 +1.3 804,995 - MPMX19_00785 0.41 +0.8 805,243 + MPMX19_00785 0.51 -0.8 805,243 + MPMX19_00785 0.51 -0.9 805,243 + MPMX19_00785 0.51 -0.5 805,243 + MPMX19_00785 0.51 -0.3 805,243 + MPMX19_00785 0.51 -0.1 805,243 + MPMX19_00785 0.51 -0.6 805,244 - MPMX19_00785 0.51 -0.2 805,244 - MPMX19_00785 0.51 -2.1 805,244 - MPMX19_00785 0.51 -1.1 805,244 - MPMX19_00785 0.51 -0.3 805,244 - MPMX19_00785 0.51 -2.4 805,244 - MPMX19_00785 0.51 +0.1 805,244 - MPMX19_00785 0.51 -0.9 805,244 - MPMX19_00785 0.51 -0.5 805,244 - MPMX19_00785 0.51 +0.2 805,244 - MPMX19_00785 0.51 -1.5 805,244 - MPMX19_00785 0.51 -1.8 805,244 - MPMX19_00785 0.51 +0.2 805,244 - MPMX19_00785 0.51 +0.3 805,244 - MPMX19_00785 0.51 -0.6 805,244 - MPMX19_00785 0.51 -0.3 805,993 + MPMX19_00785 0.81 +0.8 805,993 + MPMX19_00785 0.81 +0.5 805,993 + MPMX19_00785 0.81 -0.5 805,993 + MPMX19_00785 0.81 -1.5 805,993 + MPMX19_00785 0.81 -2.3 805,994 - MPMX19_00785 0.81 +0.0 805,994 - MPMX19_00785 0.81 -1.0 805,994 - MPMX19_00785 0.81 -1.4 806,317 + -0.7 806,516 + -0.4 806,516 + +1.0 806,517 - +0.1 806,517 - -0.4 806,549 + -0.1 806,550 - -0.5 806,597 + -1.0 806,597 + +0.1 806,597 + -0.2 806,598 - -0.7 806,651 + +0.6 806,651 + -1.1 806,652 - +1.4 806,824 + +2.2 806,824 + -0.8 806,824 + -1.4 806,824 + -2.1 806,824 + -0.7 806,824 + +0.1 806,824 + -0.0 806,825 - -0.2 806,825 - +0.1 806,825 - +2.0 806,825 - -1.2 806,825 - -0.5 806,825 - -0.1 806,825 - -0.5 806,825 - -1.8 806,825 - -0.2 806,825 - -0.2 806,825 - +0.2 806,825 - -0.5 806,825 - +0.8 806,825 - +0.3 806,845 + +0.3 806,845 + -1.5 806,845 + +0.3 806,845 + +0.3 806,845 + -0.7 806,845 + +0.3 806,845 + -0.9 806,845 + +0.2 806,845 + +0.5 806,845 + -1.4 806,845 + -0.4 806,845 + -0.2 806,845 + +0.3 806,845 + -0.1 806,845 + +0.1 806,846 - -0.4 806,846 - -1.6 806,846 - +0.4 806,846 - +0.1 806,846 - -0.3 806,846 - -0.2 806,846 - -0.3 806,846 - +1.0 806,846 - +0.7 806,846 - +0.5 807,016 + MPMX19_00786 0.19 -0.6 807,165 + MPMX19_00786 0.28 +0.4 807,457 + MPMX19_00786 0.46 -0.4 807,457 + MPMX19_00786 0.46 -1.1 807,457 + MPMX19_00786 0.46 -0.8 807,457 + MPMX19_00786 0.46 -0.1 807,457 + MPMX19_00786 0.46 -0.1 807,457 + MPMX19_00786 0.46 -0.1
Or see this region's nucleotide sequence