Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00326 and MPMX19_00327 are separated by 101 nucleotides MPMX19_00327 and MPMX19_00328 are separated by 8 nucleotides MPMX19_00328 and MPMX19_00329 are separated by 15 nucleotides MPMX19_00329 and MPMX19_00330 overlap by 35 nucleotides
MPMX19_00326: MPMX19_00326 - 50S ribosomal protein L19, at 330,344 to 330,739
_00326
MPMX19_00327: MPMX19_00327 - 50S ribosomal protein L34, at 330,841 to 330,975
_00327
MPMX19_00328: MPMX19_00328 - Ribonuclease P protein component, at 330,984 to 331,370
_00328
MPMX19_00329: MPMX19_00329 - Putative membrane protein insertion efficiency factor, at 331,386 to 331,715
_00329
MPMX19_00330: MPMX19_00330 - Membrane protein insertase YidC, at 331,681 to 333,498
_00330
Position (kb) 331
332 Strain fitness (log2 ratio) -2
-1
0
1 at 331.368 kb on + strand at 331.368 kb on + strand at 331.368 kb on + strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 331,368 + -0.2 331,368 + +1.1 331,368 + +0.6 331,369 - +0.4 331,369 - +0.6 331,369 - -1.9 331,369 - -1.6 331,369 - +1.7 331,369 - -0.7 331,440 + MPMX19_00329 0.16 -2.7 331,440 + MPMX19_00329 0.16 -0.6 331,440 + MPMX19_00329 0.16 -0.0 331,440 + MPMX19_00329 0.16 -1.4 331,440 + MPMX19_00329 0.16 -1.2 331,440 + MPMX19_00329 0.16 -0.0 331,440 + MPMX19_00329 0.16 +0.5 331,441 - MPMX19_00329 0.17 -1.7 331,441 - MPMX19_00329 0.17 -0.6 331,441 - MPMX19_00329 0.17 -0.8 331,441 - MPMX19_00329 0.17 -0.5 331,441 - MPMX19_00329 0.17 -0.7 331,441 - MPMX19_00329 0.17 -1.4 331,509 + MPMX19_00329 0.37 -2.2 331,509 + MPMX19_00329 0.37 -1.1 331,509 + MPMX19_00329 0.37 +0.3 331,509 + MPMX19_00329 0.37 +0.2 331,509 + MPMX19_00329 0.37 -0.0 331,509 + MPMX19_00329 0.37 -0.2 331,509 + MPMX19_00329 0.37 -2.4 331,510 - MPMX19_00329 0.38 -0.2 331,510 - MPMX19_00329 0.38 -1.9 331,510 - MPMX19_00329 0.38 +1.1 331,510 - MPMX19_00329 0.38 -1.9
Or see this region's nucleotide sequence