Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00291 and MPMX19_00292 are separated by 162 nucleotides MPMX19_00292 and MPMX19_00293 are separated by 17 nucleotides MPMX19_00293 and MPMX19_00294 are separated by 75 nucleotides
MPMX19_00291: MPMX19_00291 - hypothetical protein, at 291,620 to 292,447
_00291
MPMX19_00292: MPMX19_00292 - Cytochrome b561, at 292,610 to 293,173
_00292
MPMX19_00293: MPMX19_00293 - hypothetical protein, at 293,191 to 293,412
_00293
MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945
_00294
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.841 kb on - strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 292.233 kb on + strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.531 kb on + strand at 292.531 kb on + strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.543 kb on + strand at 292.544 kb on - strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.546 kb on - strand at 292.546 kb on - strand at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.759 kb on + strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 293.029 kb on - strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.467 kb on + strand at 293.468 kb on - strand at 293.479 kb on - strand at 293.489 kb on + strand at 293.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 291,621 + -0.3 291,621 + +0.0 291,621 + -1.5 291,621 + -1.9 291,621 + -1.4 291,621 + +0.9 291,622 - -0.7 291,622 - -0.5 291,622 - +0.0 291,622 - +0.7 291,622 - -0.3 291,841 - MPMX19_00291 0.27 -1.0 291,963 + MPMX19_00291 0.41 -1.9 291,963 + MPMX19_00291 0.41 -0.4 291,963 + MPMX19_00291 0.41 +0.7 291,963 + MPMX19_00291 0.41 -0.4 291,963 + MPMX19_00291 0.41 -0.7 291,964 - MPMX19_00291 0.42 -1.6 291,964 - MPMX19_00291 0.42 -2.5 291,964 - MPMX19_00291 0.42 -1.0 291,964 - MPMX19_00291 0.42 +1.0 291,964 - MPMX19_00291 0.42 -1.3 292,233 + MPMX19_00291 0.74 +0.0 292,234 - MPMX19_00291 0.74 -0.5 292,234 - MPMX19_00291 0.74 +0.4 292,234 - MPMX19_00291 0.74 -1.9 292,234 - MPMX19_00291 0.74 -1.0 292,234 - MPMX19_00291 0.74 +0.7 292,234 - MPMX19_00291 0.74 -0.4 292,234 - MPMX19_00291 0.74 -2.6 292,297 + MPMX19_00291 0.82 +0.4 292,297 + MPMX19_00291 0.82 +2.0 292,297 + MPMX19_00291 0.82 -1.0 292,297 + MPMX19_00291 0.82 -0.5 292,297 + MPMX19_00291 0.82 -2.2 292,297 + MPMX19_00291 0.82 +0.0 292,297 + MPMX19_00291 0.82 +0.5 292,297 + MPMX19_00291 0.82 -1.0 292,297 + MPMX19_00291 0.82 -2.2 292,297 + MPMX19_00291 0.82 +0.3 292,297 + MPMX19_00291 0.82 +1.4 292,297 + MPMX19_00291 0.82 +0.4 292,297 + MPMX19_00291 0.82 +0.1 292,297 + MPMX19_00291 0.82 -0.6 292,297 + MPMX19_00291 0.82 -1.2 292,297 + MPMX19_00291 0.82 -1.9 292,297 + MPMX19_00291 0.82 -2.3 292,297 + MPMX19_00291 0.82 +0.0 292,298 - MPMX19_00291 0.82 +0.2 292,298 - MPMX19_00291 0.82 -1.0 292,298 - MPMX19_00291 0.82 +0.2 292,298 - MPMX19_00291 0.82 -0.2 292,298 - MPMX19_00291 0.82 -2.6 292,298 - MPMX19_00291 0.82 -0.6 292,298 - MPMX19_00291 0.82 -0.4 292,298 - MPMX19_00291 0.82 +0.1 292,298 - MPMX19_00291 0.82 +0.4 292,298 - MPMX19_00291 0.82 -0.7 292,298 - MPMX19_00291 0.82 +0.6 292,298 - MPMX19_00291 0.82 +1.6 292,298 - MPMX19_00291 0.82 +1.5 292,298 - MPMX19_00291 0.82 -0.2 292,298 - MPMX19_00291 0.82 +0.4 292,298 - MPMX19_00291 0.82 -0.1 292,298 - MPMX19_00291 0.82 +1.2 292,298 - MPMX19_00291 0.82 -0.7 292,298 - MPMX19_00291 0.82 -0.6 292,298 - MPMX19_00291 0.82 -1.8 292,298 - MPMX19_00291 0.82 -0.6 292,298 - MPMX19_00291 0.82 +0.2 292,299 + MPMX19_00291 0.82 -2.4 292,299 + MPMX19_00291 0.82 -1.2 292,299 + MPMX19_00291 0.82 -1.2 292,299 + MPMX19_00291 0.82 -0.5 292,299 + MPMX19_00291 0.82 -1.6 292,299 + MPMX19_00291 0.82 -1.0 292,299 + MPMX19_00291 0.82 -2.4 292,299 + MPMX19_00291 0.82 +0.0 292,299 + MPMX19_00291 0.82 -1.3 292,299 + MPMX19_00291 0.82 -0.9 292,300 - MPMX19_00291 0.82 +0.3 292,300 - MPMX19_00291 0.82 +2.0 292,300 - MPMX19_00291 0.82 +1.1 292,300 - MPMX19_00291 0.82 +0.0 292,300 - MPMX19_00291 0.82 -0.4 292,300 - MPMX19_00291 0.82 -0.7 292,300 - MPMX19_00291 0.82 +0.8 292,300 - MPMX19_00291 0.82 +0.3 292,300 - MPMX19_00291 0.82 +0.3 292,300 - MPMX19_00291 0.82 -2.4 292,300 - MPMX19_00291 0.82 -1.3 292,300 - MPMX19_00291 0.82 -2.0 292,300 - MPMX19_00291 0.82 -0.5 292,300 - MPMX19_00291 0.82 +1.4 292,300 - MPMX19_00291 0.82 +0.6 292,300 - MPMX19_00291 0.82 -1.0 292,300 - MPMX19_00291 0.82 -3.4 292,300 - MPMX19_00291 0.82 +0.7 292,300 - MPMX19_00291 0.82 -1.7 292,300 - MPMX19_00291 0.82 -1.2 292,527 + +1.0 292,527 + -0.7 292,527 + -0.7 292,527 + -1.2 292,527 + -1.2 292,527 + -1.2 292,527 + +0.4 292,527 + -0.3 292,527 + -0.4 292,527 + +0.9 292,528 - -1.2 292,528 - +0.1 292,528 - -1.4 292,531 + +0.0 292,531 + -1.6 292,532 - +0.1 292,532 - -0.2 292,532 - +1.2 292,543 + -0.4 292,544 - +0.8 292,545 + -1.2 292,545 + -0.4 292,545 + -0.2 292,546 - -1.5 292,546 - -1.9 292,684 + MPMX19_00292 0.13 -1.1 292,684 + MPMX19_00292 0.13 +0.8 292,684 + MPMX19_00292 0.13 -1.4 292,685 - MPMX19_00292 0.13 +0.6 292,685 - MPMX19_00292 0.13 -0.6 292,685 - MPMX19_00292 0.13 +0.6 292,759 + MPMX19_00292 0.26 -1.5 292,760 - MPMX19_00292 0.27 +0.7 292,760 - MPMX19_00292 0.27 +0.7 292,896 + MPMX19_00292 0.51 +0.2 292,896 + MPMX19_00292 0.51 -1.0 292,896 + MPMX19_00292 0.51 -1.4 292,896 + MPMX19_00292 0.51 -0.3 292,896 + MPMX19_00292 0.51 +0.4 292,896 + MPMX19_00292 0.51 +0.4 292,897 - MPMX19_00292 0.51 +0.7 292,897 - MPMX19_00292 0.51 -0.7 292,897 - MPMX19_00292 0.51 +0.9 292,897 - MPMX19_00292 0.51 +0.4 292,897 - MPMX19_00292 0.51 -0.9 293,029 - MPMX19_00292 0.74 -0.7 293,076 + MPMX19_00292 0.83 +0.3 293,076 + MPMX19_00292 0.83 +0.5 293,077 - MPMX19_00292 0.83 +1.9 293,077 - MPMX19_00292 0.83 -1.4 293,077 - MPMX19_00292 0.83 -0.4 293,103 + MPMX19_00292 0.87 -1.7 293,103 + MPMX19_00292 0.87 +1.0 293,103 + MPMX19_00292 0.87 +0.9 293,103 + MPMX19_00292 0.87 -0.5 293,103 + MPMX19_00292 0.87 -0.4 293,103 + MPMX19_00292 0.87 -2.0 293,103 + MPMX19_00292 0.87 +0.5 293,103 + MPMX19_00292 0.87 -0.3 293,103 + MPMX19_00292 0.87 -1.5 293,103 + MPMX19_00292 0.87 +1.5 293,103 + MPMX19_00292 0.87 +0.0 293,104 - MPMX19_00292 0.88 +0.3 293,104 - MPMX19_00292 0.88 +0.8 293,104 - MPMX19_00292 0.88 +0.0 293,104 - MPMX19_00292 0.88 -0.7 293,104 - MPMX19_00292 0.88 +1.0 293,104 - MPMX19_00292 0.88 -2.0 293,104 - MPMX19_00292 0.88 -0.7 293,104 - MPMX19_00292 0.88 +0.7 293,160 + -2.3 293,160 + -0.9 293,160 + -1.2 293,160 + -2.9 293,160 + -0.4 293,160 + +1.2 293,160 + +0.7 293,160 + -0.7 293,160 + -0.8 293,160 + -0.4 293,160 + +0.9 293,160 + -0.1 293,160 + -1.0 293,160 + +0.6 293,160 + -2.7 293,160 + -0.3 293,160 + +1.3 293,160 + +0.6 293,160 + -1.3 293,160 + -2.0 293,160 + +0.8 293,160 + +0.4 293,160 + -1.0 293,160 + -0.8 293,161 - +0.5 293,161 - -0.6 293,161 - -0.3 293,161 - -1.6 293,161 - +2.9 293,161 - +0.5 293,161 - -1.4 293,161 - -1.6 293,161 - +0.0 293,161 - +0.2 293,161 - -0.1 293,161 - -1.8 293,161 - -2.2 293,161 - +1.1 293,161 - +1.3 293,161 - -1.7 293,161 - -0.9 293,161 - -0.2 293,161 - +0.9 293,161 - -0.2 293,467 + -0.6 293,468 - -0.4 293,479 - +1.0 293,489 + -0.6 293,490 - -1.6
Or see this region's nucleotide sequence