Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00182 and MPMX19_00183 overlap by 1 nucleotides MPMX19_00183 and MPMX19_00184 are separated by 252 nucleotides MPMX19_00184 and MPMX19_00185 are separated by 274 nucleotides
MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326
_00182
MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571
_00183
MPMX19_00184: MPMX19_00184 - hypothetical protein, at 192,824 to 193,495
_00184
MPMX19_00185: MPMX19_00185 - hypothetical protein, at 193,770 to 194,534
_00185
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.840 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.676 kb on + strand at 192.723 kb on + strand at 192.724 kb on - strand at 192.724 kb on - strand at 192.786 kb on + strand at 192.787 kb on - strand at 192.804 kb on + strand at 192.881 kb on + strand at 192.990 kb on + strand, within MPMX19_00184 at 192.991 kb on - strand, within MPMX19_00184 at 193.052 kb on - strand, within MPMX19_00184 at 193.068 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.172 kb on + strand, within MPMX19_00184 at 193.173 kb on - strand, within MPMX19_00184 at 193.176 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.289 kb on - strand, within MPMX19_00184 at 193.309 kb on - strand, within MPMX19_00184 at 193.361 kb on + strand, within MPMX19_00184 at 193.362 kb on - strand, within MPMX19_00184 at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.458 kb on - strand at 193.515 kb on + strand at 193.515 kb on + strand at 193.515 kb on + strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.553 kb on + strand at 193.553 kb on + strand at 193.554 kb on - strand at 193.693 kb on + strand at 193.693 kb on + strand at 193.693 kb on + strand at 193.693 kb on + strand at 193.694 kb on - strand at 193.694 kb on - strand at 193.724 kb on + strand at 193.724 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.805 kb on + strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.806 kb on - strand at 193.846 kb on + strand at 193.846 kb on + strand at 193.847 kb on - strand, within MPMX19_00185 at 193.847 kb on - strand, within MPMX19_00185 at 193.847 kb on - strand, within MPMX19_00185 at 193.847 kb on - strand, within MPMX19_00185 at 193.897 kb on - strand, within MPMX19_00185 at 193.897 kb on - strand, within MPMX19_00185 at 193.897 kb on - strand, within MPMX19_00185 at 193.897 kb on - strand, within MPMX19_00185 at 193.914 kb on + strand, within MPMX19_00185 at 193.914 kb on + strand, within MPMX19_00185 at 193.915 kb on - strand, within MPMX19_00185 at 193.915 kb on - strand, within MPMX19_00185 at 193.961 kb on - strand, within MPMX19_00185 at 193.979 kb on - strand, within MPMX19_00185 at 194.018 kb on + strand, within MPMX19_00185 at 194.019 kb on - strand, within MPMX19_00185 at 194.019 kb on - strand, within MPMX19_00185 at 194.019 kb on - strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.069 kb on + strand, within MPMX19_00185 at 194.070 kb on - strand, within MPMX19_00185 at 194.070 kb on - strand, within MPMX19_00185 at 194.070 kb on - strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.123 kb on + strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.124 kb on - strand, within MPMX19_00185 at 194.169 kb on - strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.204 kb on + strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.205 kb on - strand, within MPMX19_00185 at 194.219 kb on + strand, within MPMX19_00185 at 194.219 kb on + strand, within MPMX19_00185 at 194.220 kb on - strand, within MPMX19_00185 at 194.261 kb on + strand, within MPMX19_00185 at 194.261 kb on + strand, within MPMX19_00185 at 194.262 kb on - strand, within MPMX19_00185 at 194.262 kb on - strand, within MPMX19_00185 at 194.287 kb on + strand, within MPMX19_00185 at 194.287 kb on + strand, within MPMX19_00185 at 194.288 kb on - strand, within MPMX19_00185 at 194.288 kb on - strand, within MPMX19_00185 at 194.288 kb on - strand, within MPMX19_00185 at 194.362 kb on + strand, within MPMX19_00185 at 194.362 kb on + strand, within MPMX19_00185 at 194.417 kb on - strand, within MPMX19_00185 at 194.434 kb on + strand, within MPMX19_00185 at 194.477 kb on + strand at 194.477 kb on + strand at 194.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 191,840 + MPMX19_00182 0.36 -2.1 191,840 + MPMX19_00182 0.36 -0.5 192,600 + +0.1 192,600 + -1.9 192,600 + +0.7 192,600 + -0.7 192,600 + +1.6 192,600 + -0.0 192,601 - -2.0 192,601 - +0.1 192,601 - -1.6 192,601 - -0.6 192,601 - -1.6 192,676 + -1.5 192,723 + +0.1 192,724 - +0.4 192,724 - -0.6 192,786 + -0.7 192,787 - -0.1 192,804 + +0.4 192,881 + -0.1 192,990 + MPMX19_00184 0.25 -1.5 192,991 - MPMX19_00184 0.25 -0.1 193,052 - MPMX19_00184 0.34 -1.7 193,068 - MPMX19_00184 0.36 -1.3 193,084 - MPMX19_00184 0.39 -1.5 193,084 - MPMX19_00184 0.39 -1.2 193,172 + MPMX19_00184 0.52 -0.6 193,173 - MPMX19_00184 0.52 -1.5 193,176 + MPMX19_00184 0.52 -1.2 193,242 + MPMX19_00184 0.62 +0.1 193,242 + MPMX19_00184 0.62 +1.3 193,243 - MPMX19_00184 0.62 -0.8 193,243 - MPMX19_00184 0.62 +1.0 193,243 - MPMX19_00184 0.62 -1.4 193,289 - MPMX19_00184 0.69 -0.6 193,309 - MPMX19_00184 0.72 -0.8 193,361 + MPMX19_00184 0.80 -2.1 193,362 - MPMX19_00184 0.80 -1.4 193,436 + -1.2 193,436 + -0.9 193,436 + -2.2 193,436 + -2.2 193,436 + +1.0 193,436 + -0.8 193,436 + -0.2 193,436 + -1.3 193,437 - -0.9 193,437 - +0.6 193,437 - -0.9 193,437 - +1.1 193,445 + -2.1 193,445 + -0.8 193,445 + -0.6 193,445 + -1.8 193,446 - +1.6 193,446 - -0.1 193,446 - +0.1 193,446 - -0.9 193,446 - -1.5 193,458 - -0.2 193,515 + +0.9 193,515 + +0.8 193,515 + -1.2 193,516 - -0.1 193,516 - -1.1 193,516 - +0.7 193,516 - -2.7 193,553 + -0.7 193,553 + -3.0 193,554 - +0.1 193,693 + +0.1 193,693 + -0.7 193,693 + -0.5 193,693 + -0.8 193,694 - -0.1 193,694 - -0.1 193,724 + +1.2 193,724 + -1.5 193,805 + -0.7 193,805 + +0.9 193,805 + -2.2 193,805 + -1.5 193,805 + -0.8 193,805 + -0.7 193,805 + -0.6 193,805 + -1.5 193,805 + -1.2 193,806 - -0.8 193,806 - -2.0 193,806 - -1.4 193,806 - +0.6 193,806 - -0.1 193,806 - -1.9 193,806 - -0.7 193,806 - +0.8 193,806 - -1.1 193,806 - -2.2 193,806 - -0.2 193,846 + +0.6 193,846 + +0.6 193,847 - MPMX19_00185 0.10 -1.1 193,847 - MPMX19_00185 0.10 +0.1 193,847 - MPMX19_00185 0.10 -1.7 193,847 - MPMX19_00185 0.10 -0.9 193,897 - MPMX19_00185 0.17 -0.4 193,897 - MPMX19_00185 0.17 -0.1 193,897 - MPMX19_00185 0.17 +0.5 193,897 - MPMX19_00185 0.17 +0.3 193,914 + MPMX19_00185 0.19 +0.1 193,914 + MPMX19_00185 0.19 +0.1 193,915 - MPMX19_00185 0.19 -1.4 193,915 - MPMX19_00185 0.19 -0.7 193,961 - MPMX19_00185 0.25 -0.5 193,979 - MPMX19_00185 0.27 +0.8 194,018 + MPMX19_00185 0.32 -1.2 194,019 - MPMX19_00185 0.33 -0.5 194,019 - MPMX19_00185 0.33 -1.4 194,019 - MPMX19_00185 0.33 -0.4 194,069 + MPMX19_00185 0.39 +1.0 194,069 + MPMX19_00185 0.39 +1.3 194,069 + MPMX19_00185 0.39 +1.2 194,069 + MPMX19_00185 0.39 -1.3 194,069 + MPMX19_00185 0.39 -0.5 194,069 + MPMX19_00185 0.39 -1.4 194,070 - MPMX19_00185 0.39 +0.9 194,070 - MPMX19_00185 0.39 -0.7 194,070 - MPMX19_00185 0.39 -0.5 194,123 + MPMX19_00185 0.46 -2.5 194,123 + MPMX19_00185 0.46 +2.2 194,123 + MPMX19_00185 0.46 -0.4 194,123 + MPMX19_00185 0.46 -1.1 194,123 + MPMX19_00185 0.46 -1.3 194,123 + MPMX19_00185 0.46 -1.2 194,123 + MPMX19_00185 0.46 -0.3 194,123 + MPMX19_00185 0.46 -1.2 194,123 + MPMX19_00185 0.46 +1.3 194,124 - MPMX19_00185 0.46 -2.2 194,124 - MPMX19_00185 0.46 -1.8 194,124 - MPMX19_00185 0.46 -1.4 194,124 - MPMX19_00185 0.46 +1.2 194,124 - MPMX19_00185 0.46 -0.7 194,124 - MPMX19_00185 0.46 -0.9 194,124 - MPMX19_00185 0.46 -0.2 194,124 - MPMX19_00185 0.46 -0.3 194,169 - MPMX19_00185 0.52 -0.4 194,204 + MPMX19_00185 0.57 +0.9 194,204 + MPMX19_00185 0.57 +0.6 194,204 + MPMX19_00185 0.57 -1.4 194,204 + MPMX19_00185 0.57 -1.4 194,204 + MPMX19_00185 0.57 +0.5 194,204 + MPMX19_00185 0.57 -0.2 194,204 + MPMX19_00185 0.57 +0.0 194,204 + MPMX19_00185 0.57 +0.6 194,204 + MPMX19_00185 0.57 -0.5 194,205 - MPMX19_00185 0.57 -0.9 194,205 - MPMX19_00185 0.57 +0.8 194,205 - MPMX19_00185 0.57 -0.9 194,205 - MPMX19_00185 0.57 -0.5 194,205 - MPMX19_00185 0.57 +0.3 194,205 - MPMX19_00185 0.57 -1.3 194,205 - MPMX19_00185 0.57 +1.1 194,205 - MPMX19_00185 0.57 -1.0 194,219 + MPMX19_00185 0.59 -0.7 194,219 + MPMX19_00185 0.59 +0.1 194,220 - MPMX19_00185 0.59 -0.0 194,261 + MPMX19_00185 0.64 -1.1 194,261 + MPMX19_00185 0.64 -1.7 194,262 - MPMX19_00185 0.64 -1.7 194,262 - MPMX19_00185 0.64 -0.9 194,287 + MPMX19_00185 0.68 -0.9 194,287 + MPMX19_00185 0.68 +1.3 194,288 - MPMX19_00185 0.68 -0.5 194,288 - MPMX19_00185 0.68 -1.7 194,288 - MPMX19_00185 0.68 -0.4 194,362 + MPMX19_00185 0.77 -2.4 194,362 + MPMX19_00185 0.77 +1.1 194,417 - MPMX19_00185 0.85 -1.2 194,434 + MPMX19_00185 0.87 -0.9 194,477 + -2.8 194,477 + -2.7 194,478 - -1.2
Or see this region's nucleotide sequence