Strain Fitness in Xanthobacter sp. DMC5 around GFF99

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF98 and GFF99 are separated by 131 nucleotidesGFF99 and GFF100 are separated by 82 nucleotidesGFF100 and GFF101 are separated by 3 nucleotides GFF98 - putative lipid II flippase MurJ, at 108,710 to 110,248 GFF98 GFF99 - Tryptophan--tRNA ligase, at 110,380 to 111,414 GFF99 GFF100 - Ubiquinone biosynthesis O-methyltransferase, at 111,497 to 112,240 GFF100 GFF101 - hypothetical protein, at 112,244 to 112,747 GFF101 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1at 109.529 kb on + strand, within GFF98at 109.529 kb on + strand, within GFF98at 111.471 kb on + strandat 111.472 kb on - strandat 112.238 kb on + strandat 112.239 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
109,529 + GFF98 0.53 -1.2
109,529 + GFF98 0.53 -1.5
111,471 + +0.2
111,472 - -0.4
112,238 + -0.8
112,239 - +0.0

Or see this region's nucleotide sequence