Strain Fitness in Xanthobacter sp. DMC5 around GFF988

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF986 and GFF987 are separated by 127 nucleotidesGFF987 and GFF988 are separated by 6 nucleotidesGFF988 and GFF989 are separated by 298 nucleotides GFF986 - hypothetical protein, at 1,066,200 to 1,067,123 GFF986 GFF987 - Intermembrane phospholipid transport system ATP-binding protein MlaF, at 1,067,251 to 1,068,063 GFF987 GFF988 - hypothetical protein, at 1,068,070 to 1,069,197 GFF988 GFF989 - L-Ala-D/L-Glu epimerase, at 1,069,496 to 1,070,476 GFF989 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -1 0 1 2at 1067.208 kb on - strandat 1067.250 kb on - strandat 1069.267 kb on + strandat 1069.276 kb on + strandat 1069.393 kb on - strandat 1069.398 kb on + strandat 1069.482 kb on - strandat 1069.485 kb on - strandat 1069.485 kb on - strandat 1069.485 kb on - strandat 1069.647 kb on - strand, within GFF989at 1069.863 kb on - strand, within GFF989

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,067,208 - -0.6
1,067,250 - +0.7
1,069,267 + -1.1
1,069,276 + +1.8
1,069,393 - -0.1
1,069,398 + +0.2
1,069,482 - +0.2
1,069,485 - +0.3
1,069,485 - -1.5
1,069,485 - +0.3
1,069,647 - GFF989 0.15 +0.1
1,069,863 - GFF989 0.37 -0.3

Or see this region's nucleotide sequence