Strain Fitness in Xanthobacter sp. DMC5 around GFF985

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF984 and GFF985 are separated by 39 nucleotidesGFF985 and GFF986 are separated by 7 nucleotides GFF984 - putative protein YcjX, at 1,064,048 to 1,065,514 GFF984 GFF985 - hypothetical protein, at 1,065,554 to 1,066,192 GFF985 GFF986 - hypothetical protein, at 1,066,200 to 1,067,123 GFF986 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -1 0 1at 1064.645 kb on + strand, within GFF984at 1064.645 kb on + strand, within GFF984at 1064.646 kb on - strand, within GFF984at 1064.822 kb on + strand, within GFF984at 1064.823 kb on - strand, within GFF984at 1064.823 kb on - strand, within GFF984at 1064.823 kb on - strand, within GFF984at 1064.824 kb on + strand, within GFF984at 1064.824 kb on + strand, within GFF984at 1064.824 kb on + strand, within GFF984at 1064.825 kb on - strand, within GFF984at 1064.825 kb on - strand, within GFF984at 1065.270 kb on + strand, within GFF984at 1065.270 kb on + strand, within GFF984at 1065.270 kb on + strand, within GFF984at 1065.270 kb on + strand, within GFF984at 1065.271 kb on - strand, within GFF984at 1065.271 kb on - strand, within GFF984at 1065.378 kb on + strandat 1065.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,064,645 + GFF984 0.41 +0.5
1,064,645 + GFF984 0.41 +1.6
1,064,646 - GFF984 0.41 +0.2
1,064,822 + GFF984 0.53 +1.1
1,064,823 - GFF984 0.53 +0.5
1,064,823 - GFF984 0.53 +0.4
1,064,823 - GFF984 0.53 +0.3
1,064,824 + GFF984 0.53 -0.8
1,064,824 + GFF984 0.53 +0.9
1,064,824 + GFF984 0.53 +0.7
1,064,825 - GFF984 0.53 -0.7
1,064,825 - GFF984 0.53 -0.9
1,065,270 + GFF984 0.83 +0.9
1,065,270 + GFF984 0.83 +1.1
1,065,270 + GFF984 0.83 +1.6
1,065,270 + GFF984 0.83 +0.5
1,065,271 - GFF984 0.83 -0.7
1,065,271 - GFF984 0.83 +0.4
1,065,378 + -1.2
1,065,423 + -0.4

Or see this region's nucleotide sequence