Strain Fitness in Xanthobacter sp. DMC5 around GFF978

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF976 and GFF977 are separated by 156 nucleotidesGFF977 and GFF978 are separated by 33 nucleotidesGFF978 and GFF979 are separated by 382 nucleotides GFF976 - Glycerate dehydrogenase, at 1,053,321 to 1,054,322 GFF976 GFF977 - hypothetical protein, at 1,054,479 to 1,055,027 GFF977 GFF978 - Ferredoxin-6, at 1,055,061 to 1,055,381 GFF978 GFF979 - hypothetical protein, at 1,055,764 to 1,060,092 GFF979 Position (kb) 1055 1056Strain fitness (log2 ratio) -2 -1 0 1 2at 1054.139 kb on + strand, within GFF976at 1054.326 kb on + strandat 1054.366 kb on + strandat 1054.450 kb on + strandat 1055.028 kb on - strandat 1055.381 kb on + strandat 1056.157 kb on + strandat 1056.212 kb on - strand, within GFF979at 1056.212 kb on - strand, within GFF979

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,054,139 + GFF976 0.82 -0.6
1,054,326 + -0.8
1,054,366 + -1.3
1,054,450 + -1.3
1,055,028 - +1.0
1,055,381 + -2.2
1,056,157 + +0.1
1,056,212 - GFF979 0.10 +2.4
1,056,212 - GFF979 0.10 -0.2

Or see this region's nucleotide sequence