Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF968 and GFF969 overlap by 4 nucleotides GFF969 and GFF970 overlap by 4 nucleotides GFF970 and GFF971 are separated by 106 nucleotides GFF971 and GFF972 are separated by 10 nucleotides
GFF968 - Geranylgeranyl diphosphate synthase, at 1,046,673 to 1,047,722
GFF968
GFF969 - Vitamin B12 import ATP-binding protein BtuD, at 1,047,719 to 1,048,693
GFF969
GFF970 - Linearmycin resistance permease protein LnrM, at 1,048,690 to 1,049,883
GFF970
GFF971 - Heme exporter protein C, at 1,049,990 to 1,050,721
GFF971
GFF972 - hypothetical protein, at 1,050,732 to 1,050,902
GFF972
Position (kb) 1048
1049
1050 Strain fitness (log2 ratio) -1
0
1 at 1047.740 kb on + strand at 1047.803 kb on + strand at 1047.804 kb on - strand at 1048.244 kb on - strand, within GFF969 at 1049.293 kb on + strand, within GFF970 at 1049.294 kb on - strand, within GFF970 at 1049.503 kb on + strand, within GFF970 at 1049.504 kb on - strand, within GFF970 at 1049.504 kb on - strand, within GFF970 at 1049.978 kb on + strand at 1049.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 1,047,740 + -0.2 1,047,803 + -0.7 1,047,804 - +0.2 1,048,244 - GFF969 0.54 -0.1 1,049,293 + GFF970 0.51 -1.4 1,049,294 - GFF970 0.51 -1.6 1,049,503 + GFF970 0.68 +0.3 1,049,504 - GFF970 0.68 -1.1 1,049,504 - GFF970 0.68 -0.4 1,049,978 + +1.3 1,049,978 + -0.5
Or see this region's nucleotide sequence