Strain Fitness in Xanthobacter sp. DMC5 around GFF97

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF96 and GFF97 are separated by 114 nucleotidesGFF97 and GFF98 are separated by 154 nucleotides GFF96 - tRNA(Ile)-lysidine synthase, at 105,667 to 106,518 GFF96 GFF97 - ATP-dependent zinc metalloprotease FtsH, at 106,633 to 108,555 GFF97 GFF98 - putative lipid II flippase MurJ, at 108,710 to 110,248 GFF98 Position (kb) 106 107 108 109Strain fitness (log2 ratio) -1 0 1at 106.521 kb on + strandat 108.585 kb on + strandat 108.698 kb on + strandat 108.699 kb on - strandat 108.699 kb on - strandat 109.124 kb on + strand, within GFF98at 109.124 kb on + strand, within GFF98at 109.124 kb on + strand, within GFF98at 109.125 kb on - strand, within GFF98at 109.529 kb on + strand, within GFF98at 109.529 kb on + strand, within GFF98

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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106,521 + -0.3
108,585 + +0.2
108,698 + -0.9
108,699 - -0.6
108,699 - +0.0
109,124 + GFF98 0.27 -0.4
109,124 + GFF98 0.27 -1.7
109,124 + GFF98 0.27 +0.4
109,125 - GFF98 0.27 -1.5
109,529 + GFF98 0.53 -1.2
109,529 + GFF98 0.53 -1.5

Or see this region's nucleotide sequence