Strain Fitness in Xanthobacter sp. DMC5 around GFF957

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF955 and GFF956 are separated by 119 nucleotidesGFF956 and GFF957 are separated by 55 nucleotidesGFF957 and GFF958 are separated by 156 nucleotides GFF955 - hypothetical protein, at 1,031,594 to 1,032,028 GFF955 GFF956 - Cyclic pyranopterin monophosphate synthase, at 1,032,148 to 1,032,636 GFF956 GFF957 - Molybdopterin molybdenumtransferase, at 1,032,692 to 1,033,906 GFF957 GFF958 - LexA repressor, at 1,034,063 to 1,034,773 GFF958 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -3 -2 -1 0 1at 1031.903 kb on + strand, within GFF955at 1031.904 kb on - strand, within GFF955at 1031.904 kb on - strand, within GFF955at 1031.904 kb on - strand, within GFF955at 1031.904 kb on - strand, within GFF955at 1031.928 kb on - strand, within GFF955at 1032.201 kb on - strand, within GFF956at 1032.351 kb on + strand, within GFF956at 1032.352 kb on - strand, within GFF956at 1032.527 kb on - strand, within GFF956at 1032.527 kb on - strand, within GFF956at 1033.889 kb on - strandat 1034.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,031,903 + GFF955 0.71 +0.0
1,031,904 - GFF955 0.71 +0.6
1,031,904 - GFF955 0.71 -0.3
1,031,904 - GFF955 0.71 +1.6
1,031,904 - GFF955 0.71 +0.3
1,031,928 - GFF955 0.77 -0.2
1,032,201 - GFF956 0.11 -1.9
1,032,351 + GFF956 0.42 -2.4
1,032,352 - GFF956 0.42 -0.3
1,032,527 - GFF956 0.78 -1.1
1,032,527 - GFF956 0.78 -3.1
1,033,889 - -1.8
1,034,779 - -2.4

Or see this region's nucleotide sequence