Strain Fitness in Xanthobacter sp. DMC5 around GFF953

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF952 and GFF953 are separated by 22 nucleotidesGFF953 and GFF954 overlap by 4 nucleotidesGFF954 and GFF955 are separated by 104 nucleotides GFF952 - Anthranilate synthase component 2, at 1,029,027 to 1,029,644 GFF952 GFF953 - Anthranilate phosphoribosyltransferase, at 1,029,667 to 1,030,701 GFF953 GFF954 - Indole-3-glycerol phosphate synthase, at 1,030,698 to 1,031,489 GFF954 GFF955 - hypothetical protein, at 1,031,594 to 1,032,028 GFF955 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -1 0 1at 1031.487 kb on + strandat 1031.487 kb on + strandat 1031.500 kb on + strandat 1031.521 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
1,031,487 + +0.2
1,031,487 + +0.4
1,031,500 + -1.5
1,031,521 - -0.1

Or see this region's nucleotide sequence