Strain Fitness in Xanthobacter sp. DMC5 around GFF950

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF949 and GFF950 are separated by 12 nucleotidesGFF950 and GFF951 are separated by 4 nucleotidesGFF951 and GFF952 are separated by 366 nucleotides GFF949 - Peptidyl-prolyl cis-trans isomerase D, at 1,024,766 to 1,026,661 GFF949 GFF950 - Anthranilate synthase component 1, at 1,026,674 to 1,028,185 GFF950 GFF951 - hypothetical protein, at 1,028,190 to 1,028,660 GFF951 GFF952 - Anthranilate synthase component 2, at 1,029,027 to 1,029,644 GFF952 Position (kb) 1026 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1at 1025.695 kb on + strand, within GFF949at 1026.227 kb on + strand, within GFF949at 1026.575 kb on + strandat 1026.861 kb on - strand, within GFF950at 1028.277 kb on + strand, within GFF951at 1028.277 kb on + strand, within GFF951at 1028.396 kb on - strand, within GFF951at 1028.508 kb on + strand, within GFF951at 1028.509 kb on - strand, within GFF951at 1028.604 kb on + strand, within GFF951

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,025,695 + GFF949 0.49 +1.0
1,026,227 + GFF949 0.77 -1.2
1,026,575 + +0.3
1,026,861 - GFF950 0.12 +0.3
1,028,277 + GFF951 0.18 +0.3
1,028,277 + GFF951 0.18 -2.1
1,028,396 - GFF951 0.44 -0.1
1,028,508 + GFF951 0.68 -0.7
1,028,509 - GFF951 0.68 -1.1
1,028,604 + GFF951 0.88 +1.6

Or see this region's nucleotide sequence